Basic Information
Locus ID:
nbisL1-mrna-15778
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
BEST Arabidopsis thaliana protein match is
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001425F_pilon | 401880 | 405275 | + | nbisL1-mrna-15778 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 42,059.21 Da | 44.77 | 84.17 | -0.26 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G07040.1 | 0 | |
| RefSeq | XP_018812300.1 | uncharacterized protein LOC108984712 [Juglans regia] | 0 |
| Q9LMJ7 | 2-oxoadipate dioxygenase/decarboxylase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g07040 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2M9I7 | Uncharacterized protein LOC105649775 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg9371 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_13469, gene_3733 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah013132 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g154640 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg43127, Sbi_jg45725 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11574 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00027595 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl35965, Sgl41264 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000678, gene:ENSEOMG00000005909 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0007540, CQ.Regalona.r1.6BG0008140 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30224570 |
| Apiaceae | Apium graveolens | 1 | Ag8G01413 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G015750 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709778 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.534.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G15312 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G07040.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007958m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g05760.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g043720.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0046 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0035 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g12940 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g33190 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.195 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22742 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1845, BH01.2159, CH01.2255 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0127000, gene-QOZ80_2BG0182560 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0040790.1 |
| Poaceae | Oryza coarctata | 2 | Oco19G005530, Oco20G005450 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g32680.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G212700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502522 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G013300, Chr15G015250 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G273900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG022210, gene_TRIDC1BG026930 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G145800.1, TraesCS1B02G164000.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb046510_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19272 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16152 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG13.325 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g24060 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_17_RagTag.329 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22995 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11257 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14853 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000013l.227 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006624 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7138 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15778 |
| Salicaceae | Populus euphratica | 1 | populus_peu07792 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641519 |
| Solanaceae | Solanum chilense | 1 | SOLCI002990800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107019827 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_90 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0673 |
| Zosteraceae | Zostera marina | 1 | Zosma05g24720.v3.1 |