Basic Information
Locus ID:
nbisL1-mrna-15771
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001425F_pilon | 366476 | 369626 | + | nbisL1-mrna-15771 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.91 | 20,491.11 Da | 68.04 | 70.66 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 7 | 174 | 6.35205E-69 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 8 | 51 | 4.8E-7 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 80 | 173 | 4.2E-38 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 1 | 179 | 3.99E-58 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 177 | 1.6E-64 | IPR016135 |
| SMART | SM00212 | ubc_7 | 7 | 179 | 1.4E-63 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 4 | 179 | 52.231724 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 106 | 121 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02760.1 | ubiquiting-conjugating enzyme 2. ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene. | 0 |
| RefSeq | XP_022745804.1 | - | 0 |
| P42745 | Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana OX=3702 GN=UBC2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6P5YZ37 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology