Basic Information
Locus ID:
nbisL1-mrna-15710
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Endochitinase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 6580481 | 6583002 | - | nbisL1-mrna-15710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.25 | 47,654.48 Da | 32.10 | 57.88 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00325 | chitinase_GH19 | 202 | 430 | 8.91478E-111 | - |
| CDD | cd00035 | ChtBD1 | 140 | 176 | 3.47147E-17 | - |
| Pfam | PF00187 | Chitin recognition protein | 139 | 176 | 6.3E-14 | IPR001002 |
| Pfam | PF00182 | Chitinase class I | 201 | 430 | 6.3E-127 | IPR000726 |
| Pfam | PF05627 | Cleavage site for pathogenic type III effector avirulence factor Avr | 5 | 29 | 7.3E-13 | IPR008700 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 198 | 436 | 2.76E-105 | IPR023346 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 139 | 180 | 3.53E-13 | IPR036861 |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 284 | 339 | 8.6E-117 | - |
| Gene3D | G3DSA:1.10.530.10 | - | 206 | 436 | 8.6E-117 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 137 | 178 | 4.3E-16 | IPR036861 |
| SMART | SM00270 | ChitinBD_3 | 139 | 176 | 8.4E-18 | IPR001002 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 137 | 178 | 10.77644 | IPR001002 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 219 | 241 | - | IPR000726 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 343 | 353 | - | IPR000726 |
| PRINTS | PR00451 | Chitin-binding domain signature | 147 | 155 | 1.6E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 155 | 162 | 1.6E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 162 | 169 | 1.6E-5 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_015576332.2 | endochitinase [Ricinus communis] | 0 |
| P36907 | Endochitinase OS=Pisum sativum OX=3888 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A6MFM2 | Chitin-binding type-1 domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_034832 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology