Basic Information
Locus ID:
nbisL1-mrna-15693
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 7643905 | 7651922 | + | nbisL1-mrna-15693 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 83,983.12 Da | 41.90 | 71.10 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 489 | 774 | 4.04995E-67 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 576 | 611 | 0.0018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 534 | 567 | 9.2E-5 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 1.4E-7 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 741 | 774 | 0.012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 658 | 691 | 7.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 496 | 525 | 7.9E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 486 | 774 | 6.83E-65 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 621 | 774 | 1.9E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 448 | 620 | 2.1E-35 | IPR015943 |
| SMART | SM00320 | WD40_4 | 694 | 733 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 486 | 525 | 2.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 571 | 611 | 1.0E-5 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 5.3E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 735 | 774 | 2.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 653 | 691 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 614 | 650 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 528 | 567 | 3.7E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 578 | 620 | 10.775796 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 742 | 774 | 12.156496 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 493 | 534 | 10.575287 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 742 | 774 | 13.048234 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 660 | 700 | 9.03805 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 578 | 612 | 8.755605 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 493 | 528 | 8.676514 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 535 | 576 | 13.482671 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.630869 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 535 | 567 | 10.970139 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 512 | 526 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 512 | 526 | 1.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 761 | 774 | 1.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 554 | 568 | 1.3E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 396 | - | - |
| Coils | Coil | Coil | 78 | 98 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_015574101.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X2 [Ricinus communis] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MFZ5 | Transcriptional corepressor LEUNIG_HOMOLOG isoform X2 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology