Basic Information
Locus ID:
nbisL1-mrna-15681
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 7552418 | 7557742 | - | nbisL1-mrna-15681 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 57,676.00 Da | 55.48 | 76.33 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 300 | 399 | 2.18118E-16 | - |
| CDD | cd16872 | ARID_HMGB9-like | 37 | 122 | 4.60764E-48 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 40 | 122 | 2.6E-18 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 300 | 346 | 1.7E-7 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 287 | 346 | 2.23E-10 | IPR036910 |
| SUPERFAMILY | SSF47095 | HMG-box | 381 | 408 | 9.82E-6 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 32 | 130 | 6.15E-29 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 27 | 133 | 2.1E-27 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 282 | 412 | 4.4E-18 | IPR036910 |
| SMART | SM00501 | bright_3 | 36 | 127 | 1.7E-28 | IPR001606 |
| SMART | SM01014 | ARID_2 | 32 | 122 | 1.3E-27 | - |
| SMART | SM00398 | hmgende2 | 299 | 403 | 1.3E-7 | IPR009071 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 300 | 402 | 10.786131 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 35 | 126 | 26.492697 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 434 | 487 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 434 | 467 | - | - |
| Coils | Coil | Coil | 384 | 404 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_012071138.1 | high mobility group B protein 15 [Jatropha curcas] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2JIC1 | High mobility group B protein 15 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology