Basic Information
Locus ID:
nbisL1-mrna-15625
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Short Name:
D2HGDH
Description:
D-2-hydroxyglutarate dehydrogenase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 5900574 | 5906315 | - | nbisL1-mrna-15625 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 63,436.04 Da | 35.46 | 97.17 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01565 | FAD binding domain | 151 | 286 | 2.6E-33 | IPR006094 |
| Pfam | PF02913 | FAD linked oxidases, C-terminal domain | 327 | 567 | 7.2E-56 | IPR004113 |
| SUPERFAMILY | SSF56176 | FAD-binding/transporter-associated domain-like | 113 | 323 | 8.88E-67 | IPR036318 |
| SUPERFAMILY | SSF55103 | FAD-linked oxidases, C-terminal domain | 328 | 570 | 3.11E-51 | IPR016164 |
| Gene3D | G3DSA:1.10.45.10 | - | 528 | 568 | 4.0E-12 | IPR016171 |
| Gene3D | G3DSA:3.30.43.10 | - | 99 | 200 | 5.9E-34 | IPR016167 |
| Gene3D | G3DSA:3.30.70.2190 | - | 326 | 446 | 3.2E-38 | - |
| Gene3D | G3DSA:3.30.465.10 | - | 203 | 324 | 6.0E-34 | IPR016169 |
| Gene3D | G3DSA:3.30.70.2740 | - | 449 | 527 | 3.1E-25 | - |
| ProSiteProfiles | PS51387 | PCMH-type FAD-binding domain profile. | 145 | 324 | 24.579998 | IPR016166 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36400.1 | FAD-linked oxidases family protein. Encodes a (D)-2-hydroxyglutarate dehydrogenase. | 0 |
| RefSeq | XP_024461687.2 | D-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X1 [Populus trichocarpa] | 0 |
| O23240 | D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=D2HGDH PE=1 SV=3 | 0 | |
| TrEMBL | A0A2P2LJW8 | D-2-hydroxyglutarate dehydrogenase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg33, jg39414 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16800 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027657 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g129540 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14176, Sbi_jg53432 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg10077 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00025384 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34782, Sgl40182 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000002703, gene:ENSEOMG00000027896 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0027330, CQ.Regalona.r1.6BG0028740 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30209420 |
| Apiaceae | Apium graveolens | 1 | Ag4G00443 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G013020 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1999.V1.1, AsparagusV1_03.2108.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G00935 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G36400.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000690m.g.v1.0, Thhalv10024815m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g34060.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g087940.2N, BniB05g002310.2N, BniB08g049200.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0255 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0281 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g05390 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0029s00020.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g06040 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2415 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014327 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb8G36458 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.450, BH03.546, CH03.633 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0558680, gene-QOZ80_7BG0589840 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0195930.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_042888 |
| Poaceae | Oryza coarctata | 2 | Oco13G002900, Oco14G003180 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g08950.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G059800 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G000120, Chr28G002210 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G775800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG065280, gene_TRIDC2BG069790 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G457900.2, TraesCS2B02G480200.3 ... |
| Poaceae | Zea mays | 1 | Zm00001eb302200_P006 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-26772, nbis-gene-57557 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6114 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1672, evm.TU.LG12.302 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g11640 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.2063 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17062 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13790 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11746 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.1257 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007030 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15625 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3046 |
| Salicaceae | Populus euphratica | 1 | populus_peu23639 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621298 |
| Solanaceae | Solanum chilense | 1 | SOLCI004703700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008794 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0791 |
| Zosteraceae | Zostera marina | 1 | Zosma03g04780.v3.1 |