halophFGD

Basic Information

Locus ID: nbisL1-mrna-1561

Species & Taxonomic ID: Ceriops zippeliana & 413951

Genome Assembly: GCA_037897445.1

Description: At1g04910-like

Maps and Mapping Data

Chromosome/Scaffold	Start	End	Strand	ID
000017F_pilon	3869305	3873105	+	nbisL1-mrna-1561

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.78	56,105.06 Da	48.43	92.76	-0.23

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd11299	O-FucT_plant	94	419	1.27757E-162	IPR024709
Pfam	PF10250	GDP-fucose protein O-fucosyltransferase	94	413	1.5E-74	IPR019378
PIRSF	PIRSF009360	UCP009360	5	480	1.2E-178	IPR024709

Best hit

Source	Best Hit ID	Description
TAIR	AT5G15740.1	O-fucosyltransferase family protein.
RefSeq	XP_021674852.1	uncharacterized protein At1g04910-like [Hevea brasiliensis]
Swiss-Prot	Q4V398	Rhamnogalacturonan I rhamnosyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=RRT1 PE=1 SV=1
TrEMBL	A0A2P2M3P0	O-fucosyltransferase family protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg13228, jg17550, jg27377, jg40154, jg5399, jg9312
Aizoaceae	Mesembryanthemum crystallinum	3	gene_16960, gene_19717, gene_3812
Amaranthaceae	Atriplex hortensis	3	Ah001314, Ah013141, Ah035628
Amaranthaceae	Beta vulgaris	4	BVRB_2g028230, BVRB_5g113610, BVRB_6g139960, BVRB_6g153420
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg21671, Sbi_jg22141, Sbi_jg30948, Sbi_jg42969 ... Sbi_jg45577, Sbi_jg45585, Sbi_jg58326
Amaranthaceae	Salicornia europaea	3	Seu_jg11429, Seu_jg16071, Seu_jg25930
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00002109, GOSA_00004795, GOSA_00008688, GOSA_00023597
Amaranthaceae	Suaeda glauca	7	Sgl34921, Sgl35650, Sgl40320, Sgl40988, Sgl54879, Sgl62620 ... Sgl67186
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000002958, gene:ENSEOMG00000006576 ... gene:ENSEOMG00000014207, gene:ENSEOMG00000019176, gene:ENSEOMG00000019522, gene:ENSEOMG00000023826, gene:ENSEOMG00000048340
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.2AG0018060, CQ.Regalona.r1.2BG0019620 ... CQ.Regalona.r1.5AG0018960, CQ.Regalona.r1.5BG0020310, CQ.Regalona.r1.6AG0000670, CQ.Regalona.r1.6BG0000610
Anacardiaceae	Pistacia vera	3	pistato.v30145440, pistato.v30192500, pistato.v30227470
Apiaceae	Apium graveolens	1	Ag8G01366
Arecaceae	Cocos nucifera	5	COCNU_01G013870, COCNU_04G012010, COCNU_05G007770 ... COCNU_11G005710, COCNU_16G005170
Arecaceae	Phoenix dactylifera	5	gene-LOC103702197, gene-LOC103702756, gene-LOC103706560 ... gene-LOC103709687, gene-LOC103721300
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.567.V1.1, AsparagusV1_05.2231.V1.1 ... AsparagusV1_05.603.V1.1
Asteraceae	Flaveria trinervia	9	Ftri10G16912, Ftri13G06670, Ftri16G23350, Ftri18G04891 ... Ftri18G16791, Ftri1G02827, Ftri8G09699, Ftri9G00666, Ftri9G05642
Brassicaceae	Arabidopsis thaliana	4	AT1G14020.1, AT2G03280.2, AT3G02250.1, AT5G15740.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10004114m.g.v1.0, Thhalv10007443m.g.v1.0 ... Thhalv10013286m.g.v1.0, Thhalv10020530m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g12380.v2.2, Sp2g14210.v2.2, Sp3g01320.v2.2 ... Sp6g28380.v2.2
Brassicaceae	Brassica nigra	6	BniB02g047100.2N, BniB03g005890.2N, BniB04g014180.2N ... BniB07g034730.2N, BniB07g061450.2N, BniB08g007550.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq03G2335, Ceq07G0176, Ceq08G0516
Casuarinaceae	Casuarina glauca	3	Cgl03G2472, Cgl07G0178, Cgl08G0473
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno03g11270, gene.Cymno05g07300, gene.Cymno05g14200
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate04g06950, gene.Thate04g23280, gene.Thate04g27140 ... gene.Thate06g05900, gene.Thate07g03930
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-11160, nbisL1-mrna-6519
Nitrariaceae	Nitraria sibirica	6	evm.TU.LG02.342, evm.TU.LG03.300, evm.TU.LG03.426 ... evm.TU.LG03.427, evm.TU.LG03.428, evm.TU.LG10.497
Plantaginaceae	Plantago ovata	3	Pov_00023713, Pov_00027106, Pov_00033186
Plumbaginaceae	Limonium bicolor	6	Lb0G37418, Lb1G02013, Lb3G20872, Lb3G20877, Lb4G26100 ... Lb6G32536
Poaceae	Echinochloa crus-galli	19	AH01.3771, AH01.4840, AH02.516, AH03.2283, AH06.1165 ... AH07.3311, BH01.4120, BH01.4774, BH02.534, BH03.2110, BH06.1210, BH07.3127, CH01.4381, CH01.5419, CH02.595, CH03.2610, CH03.2612, CH06.1331, CH07.3196
Poaceae	Eleusine coracana subsp. coracana	12	gene-QOZ80_1AG0011120, gene-QOZ80_1BG0059720 ... gene-QOZ80_2AG0144080, gene-QOZ80_2BG0199520, gene-QOZ80_3AG0235250, gene-QOZ80_3AG0246840, gene-QOZ80_3BG0281380, gene-QOZ80_3BG0292880, gene-QOZ80_6AG0517350, gene-QOZ80_6AG0538610, gene-QOZ80_6BG0469240, gene-QOZ80_6BG0491860
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.3HG0234260.1, HORVU.MOREX.r3.4HG0379530.1 ... HORVU.MOREX.r3.4HG0403370.1, HORVU.MOREX.r3.5HG0488620.1, HORVU.MOREX.r3.6HG0611280.1, HORVU.MOREX.r3.7HG0672060.1
Poaceae	Lolium multiflorum	7	gene-QYE76_005964, gene-QYE76_025215, gene-QYE76_029450 ... gene-QYE76_049937, gene-QYE76_068159, gene-QYE76_068197, gene-QYE76_070485
Poaceae	Oryza coarctata	10	Oco01G002690, Oco02G002740, Oco03G020460, Oco04G021100 ... Oco05G004040, Oco05G012550, Oco06G013930, Oco11G007390, Oco12G007460, Oco17G007320
Poaceae	Oryza sativa	6	LOC_Os01g07410.1, LOC_Os02g49460.1, LOC_Os03g07310.1 ... LOC_Os03g21090.1, LOC_Os06g17390.1, LOC_Os09g29940.1
Poaceae	Paspalum vaginatum	6	gene-BS78_01G366900, gene-BS78_01G467000 ... gene-BS78_02G214800, gene-BS78_03G051600, gene-BS78_04G261800, gene-BS78_10G119400
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0101292, Pt_Chr0107832, Pt_Chr0207423, Pt_Chr0400358 ... Pt_Chr0404421, Pt_Chr0701717, Pt_Chr0703642
Poaceae	Sporobolus alterniflorus	16	Chr01G033780, Chr01G036230, Chr02G019450, Chr03G004940 ... Chr05G010420, Chr08G000020, Chr09G021180, Chr0G008270, Chr0G015340, Chr11G017840, Chr12G003230, Chr12G005830, Chr13G005450, Chr14G005610, Chr14G015740, Chr21G005180
Poaceae	Thinopyrum elongatum	6	Tel3E01G166600, Tel4E01G314200, Tel4E01G479900 ... Tel5E01G403000, Tel6E01G524600, Tel7E01G386600
Poaceae	Triticum dicoccoides	12	gene_TRIDC3AG011440, gene_TRIDC3BG015430 ... gene_TRIDC4AG002440, gene_TRIDC4AG018210, gene_TRIDC4BG031490, gene_TRIDC4BG049160, gene_TRIDC5AG039290, gene_TRIDC5BG041620, gene_TRIDC6AG043970, gene_TRIDC6BG051620, gene_TRIDC7AG026890, gene_TRIDC7BG017470
Poaceae	Triticum aestivum	18	TraesCS3A02G095200.2, TraesCS3B02G110800.1 ... TraesCS3D02G095400.1, TraesCS4A02G018000.1, TraesCS4A02G131200.2, TraesCS4B02G173400.1, TraesCS4B02G286100.1, TraesCS4D02G175500.2, TraesCS4D02G284800.1, TraesCS5A02G251600.3, TraesCS5B02G249700.2, TraesCS5D02G259500.1, TraesCS6A02G287900.1, TraesCS6B02G317300.1, TraesCS6D02G268600.1, TraesCS7A02G213300.1, TraesCS7B02G120300.1, TraesCS7D02G215200.1
Poaceae	Zea mays	9	Zm00001eb005340_P002, Zm00001eb015680_P001 ... Zm00001eb123150_P001, Zm00001eb253330_P001, Zm00001eb280840_P001, Zm00001eb315920_P001, Zm00001eb336480_P001, Zm00001eb380680_P002, Zm00001eb402380_P002
Poaceae	Zoysia japonica	4	nbis-gene-19571, nbis-gene-45580, nbis-gene-53996 ... nbis-gene-8856
Poaceae	Zoysia macrostachya	7	Zma_g10021, Zma_g1287, Zma_g14321, Zma_g29502, Zma_g31752 ... Zma_g32731, Zma_g4341
Portulacaceae	Portulaca oleracea	9	evm.TU.LG02.96, evm.TU.LG03.164, evm.TU.LG05.716 ... evm.TU.LG09.1330, evm.TU.LG12.1554, evm.TU.LG13.424, evm.TU.LG14.1887, evm.TU.LG21.123, evm.TU.LG25.606
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g14800, gene.Posoc01g29860, gene.Posoc02g27960
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_11_RagTag.211, evm.TU.Scaffold_15_RagTag.505 ... evm.TU.Scaffold_17_RagTag.378, evm.TU.Scaffold_17_RagTag.510, evm.TU.Scaffold_4_RagTag.819, evm.TU.Scaffold_6_RagTag.415
Rhizophoraceae	Carallia pectinifolia	10	nbisL1-mrna-14234, nbisL1-mrna-15314, nbisL1-mrna-1981 ... nbisL1-mrna-2126, nbisL1-mrna-22808, nbisL1-mrna-22929, nbisL1-mrna-26675, nbisL1-mrna-26676, nbisL1-mrna-26678, nbisL1-mrna-28533
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-10057, nbisL1-mrna-1274, nbisL1-mrna-14949 ... nbisL1-mrna-15740, nbisL1-mrna-17626
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-14916, nbisL1-mrna-1561, nbisL1-mrna-15848 ... nbisL1-mrna-329
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000001l.252, evm.TU.utg000005l.253 ... evm.TU.utg000008l.526, evm.TU.utg000011l.224, evm.TU.utg000013l.273
Rhizophoraceae	Kandelia obovata	4	Maker00001542, Maker00006472, Maker00007907, Maker00010171
Rhizophoraceae	Rhizophora apiculata	7	nbisL1-mrna-11733, nbisL1-mrna-13860, nbisL1-mrna-13861 ... nbisL1-mrna-13862, nbisL1-mrna-14379, nbisL1-mrna-341, nbisL1-mrna-7186
Rhizophoraceae	Rhizophora mangle	7	nbisL1-mrna-14962, nbisL1-mrna-19022, nbisL1-mrna-19306 ... nbisL1-mrna-2522, nbisL1-mrna-2523, nbisL1-mrna-2524, nbisL1-mrna-3816
Salicaceae	Populus euphratica	9	populus_peu06753, populus_peu09398, populus_peu09425 ... populus_peu20643, populus_peu22010, populus_peu25095, populus_peu28357, populus_peu28372, populus_peu37459
Solanaceae	Lycium barbarum	6	gene-LOC132600245, gene-LOC132603533, gene-LOC132626083 ... gene-LOC132632821, gene-LOC132639925, gene-LOC132642038
Solanaceae	Solanum chilense	4	SOLCI000642700, SOLCI001741300, SOLCI003178400 ... SOLCI004074500
Solanaceae	Solanum pennellii	5	gene-LOC107007491, gene-LOC107008438, gene-LOC107014773 ... gene-LOC107020228, gene-LOC107021118
Tamaricaceae	Reaumuria soongarica	5	STRG.15349_chr06_+, STRG.16659_chr08_-, gene_13653, gene_48 ... gene_7138
Tamaricaceae	Tamarix chinensis	5	TC01G0124, TC01G3035, TC03G0790, TC05G1348, TC09G1274
Zosteraceae	Zostera marina	8	Zosma02g17010.v3.1, Zosma02g17020.v3.1, Zosma02g21040.v3.1 ... Zosma03g20490.v3.1, Zosma03g20520.v3.1, Zosma03g20550.v3.1, Zosma03g30360.v3.1, Zosma04g19570.v3.1