Basic Information
Locus ID:
nbisL1-mrna-15609
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Probably inactive leucine-rich repeat receptor-like protein kinase
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 6897603 | 6902369 | - | nbisL1-mrna-15609 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.24 | 109,327.43 Da | 39.20 | 106.57 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 721 | 991 | 4.82406E-90 | - |
| Pfam | PF13855 | Leucine rich repeat | 265 | 325 | 4.7E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 31 | 70 | 1.5E-11 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 717 | 986 | 1.5E-41 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 386 | 446 | 9.6E-7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 123 | 143 | 0.94 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 705 | 991 | 4.43E-67 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 46 | 398 | 3.74E-63 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 311 | 581 | 1.51E-52 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 797 | 1001 | 1.8E-53 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 715 | 796 | 5.1E-15 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 358 | 605 | 1.5E-65 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 305 | 357 | 2.5E-18 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 185 | 304 | 1.3E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 33 | 184 | 7.0E-42 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 142 | 166 | 43.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 457 | 481 | 260.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 408 | 432 | 76.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 240 | 264 | 75.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 336 | 360 | 55.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 97 | 121 | 210.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 312 | 335 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 190 | 216 | 140.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 192 | 213 | 7.149804 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 715 | 991 | 36.103195 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 721 | 745 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 336 | 349 | 9.7E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 315 | 328 | 9.7E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G28040.1 | Leucine-rich receptor-like protein kinase family protein. | 0 |
| RefSeq | XP_002321093.1 | - | 0 |
| Q9LRT1 | Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana OX=3702 GN=At3g28040 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2IPZ9 | Leucine-rich repeat transmembrane protein kinase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg10995 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4763 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022393 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g064680 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg59036, Sbi_jg59037, Sbi_jg63588 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23297 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012858 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02454, Sgl07607 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000031161, gene:ENSEOMG00000043670 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0024490, CQ.Regalona.r1.3BG0025370 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30056840 |
| Apiaceae | Apium graveolens | 1 | Ag9G00653 |
| Arecaceae | Cocos nucifera | 1 | scaffold000528G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103697014 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.372.V1.1, AsparagusV1_09.1081.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri12G20244, Ftri17G01573, Ftri17G33070 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G28040.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003580m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g17040.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g068100.2N, BniB07g036110.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0631 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0629 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g12650 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate04g22810, gene.Thate09g12820, gene.Thate09g12830 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.81 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00025223 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G09863, Lb3G17691, Lb3G19084 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4566, BH02.4620, CH02.4662 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0047120, gene-QOZ80_1BG0096950 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0322660.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_058246 |
| Poaceae | Oryza coarctata | 2 | Oco01G030300, Oco02G031440 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g72700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G407200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0605432, Pt_Chr0605777 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G000770, Chr03G023660, Chr05G033860, Chr08G018170 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G811600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG070680, gene_TRIDC3BG080280 |
| Poaceae | Triticum aestivum | 2 | TraesCS3A02G495400.1, TraesCS3D02G502600.1 |
| Poaceae | Zea mays | 2 | Zm00001eb140560_P001, Zm00001eb362650_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-28125 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11962 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1616, evm.TU.LG21.1054 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g02280 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.1440, evm.TU.Scaffold_6_RagTag.1049 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15609 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-20974, nbisL1-mrna-3588 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-2667, nbisL1-mrna-2668, nbisL1-mrna-903 ... |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.663, evm.TU.utg000019l.379 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001776, Maker00008013 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12284, nbisL1-mrna-13636 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-24450, nbisL1-mrna-24805, nbisL1-mrna-4200 |
| Salicaceae | Populus euphratica | 2 | populus_peu27075, populus_peu30995 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132608939 |
| Solanaceae | Solanum chilense | 1 | SOLCI001555200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107030979 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12383 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G2059 |
| Zosteraceae | Zostera marina | 1 | Zosma05g08370.v3.1 |