Basic Information
Locus ID:
nbisL1-mrna-15578
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Short Name:
CPK24
Description:
calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 6555756 | 6558333 | + | nbisL1-mrna-15578 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 40,973.89 Da | 36.99 | 80.53 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 250 | 313 | 3.90149E-13 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 41 | 118 | 1.0E-16 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 250 | 312 | 1.0E-10 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 124 | 168 | 1.5E-10 | IPR000719 |
| SUPERFAMILY | SSF47473 | EF-hand | 208 | 317 | 9.22E-23 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 38 | 168 | 1.19E-35 | IPR011009 |
| Gene3D | G3DSA:1.10.238.10 | - | 192 | 317 | 4.4E-19 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 118 | 183 | 3.3E-13 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 30 | 117 | 1.1E-23 | - |
| SMART | SM00220 | serkin_6 | 41 | 293 | 7.3E-11 | IPR000719 |
| SMART | SM00054 | efh_1 | 202 | 225 | 120.0 | IPR002048 |
| SMART | SM00054 | efh_1 | 250 | 278 | 0.037 | IPR002048 |
| SMART | SM00054 | efh_1 | 287 | 315 | 0.0029 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 246 | 281 | 12.393354 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 283 | 318 | 13.313904 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 41 | 276 | 13.658404 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 132 | 144 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 47 | 70 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 296 | 308 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 259 | 271 | - | IPR018247 |
| PRINTS | PR01697 | Parvalbumin signature | 259 | 275 | 4.2E-5 | - |
| PRINTS | PR01697 | Parvalbumin signature | 295 | 308 | 4.2E-5 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31500.1 | calcium-dependent protein kinase 24. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_012066379.1 | - | 0 |
| Q9SIQ7 | Calcium-dependent protein kinase 24 OS=Arabidopsis thaliana OX=3702 GN=CPK24 PE=2 SV=1 | 0 | |
| TrEMBL | B9HH70 | Calcium-dependent protein kinase 24-like OS=Populus trichocarpa OX=3694 GN=POPTR_007G127000 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg16308 |
| Arecaceae | Cocos nucifera | 3 | scaffold014035G000030, scaffold014035G000040 ... |
| Posidoniaceae | Posidonia oceanica | 14 | gene.Posoc01g21110, gene.Posoc02g09000, gene.Posoc02g20180 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1078 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15578 |
| Salicaceae | Populus euphratica | 1 | populus_peu35870 |
| Zosteraceae | Zostera marina | 1 | Zosma03g11290.v3.1 |