Basic Information
Locus ID:
nbisL1-mrna-15570
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001811F_pilon | 1652338 | 1654770 | + | nbisL1-mrna-15570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.26 | 45,841.60 Da | 33.23 | 88.37 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 195 | 323 | 3.4E-12 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 39 | 115 | 5.5E-7 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 188 | 323 | 2.75E-15 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 34 | 174 | 6.41E-18 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 166 | 324 | 7.1E-9 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 27 | 165 | 2.1E-11 | IPR036378 |
| SMART | SM00554 | fasc_3 | 220 | 324 | 6.2E-11 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 28 | 176 | 10.933161 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 182 | 321 | 12.402185 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 424 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12730.1 | FASCICLIN-like arabinogalactan 2. AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds | 0 |
| RefSeq | XP_021680099.1 | fasciclin-like arabinogalactan protein 2 [Hevea brasiliensis] | 0 |
| Q9SU13 | Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLA2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A6KWA7 | Fasciclin-like arabinogalactan protein 2 OS=Hevea brasiliensis OX=3981 GN=GH714_023004 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology