HalophFGD

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Basic Information
Locus ID: nbisL1-mrna-15569
Species & Taxonomic ID: Ceriops zippeliana & 413951
Genome Assembly: GCA_037897445.1
Description: f-box protein
Maps and Mapping Data
Chromosome Start End Strand ID
000194F_pilon 670255 674302 - nbisL1-mrna-15569
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.36 54,927.03 Da 35.74 81.02 -0.27
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
SUPERFAMILY SSF52047 RNI-like 262 342 9.02E-6 -
SUPERFAMILY SSF81383 F-box domain 222 257 9.16E-6 IPR036047
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 227 432 4.0E-12 IPR032675
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT3G26000.1 Ribonuclease inhibitor. 0
RefSeq XP_021647467.1 F-box protein SKIP14-like [Hevea brasiliensis] 0
Swiss-Prot Q9LU91 F-box protein SKIP14 OS=Arabidopsis thaliana OX=3702 GN=SKIP14 PE=1 SV=1 0
TrEMBL A0A2P2M605 F-box domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 5 jg17723, jg34553, jg5553, jg7355, jg9550
Aizoaceae Mesembryanthemum crystallinum 2 gene_3545, gene_4286
Amaranthaceae Atriplex hortensis 2 Ah013828, Ah025222
Amaranthaceae Beta vulgaris 2 BVRB_6g144370, BVRB_6g151610
Amaranthaceae Salicornia bigelovii 4 Sbi_jg41964, Sbi_jg42737, Sbi_jg45362, Sbi_jg48173
Amaranthaceae Salicornia europaea 2 Seu_jg11225, Seu_jg27517
Amaranthaceae Suaeda aralocaspica 2 GOSA_00002573, GOSA_00019458
Amaranthaceae Suaeda glauca 2 Sgl35103, Sgl40482
Amaranthaceae Chenopodium album 6 gene:ENSEOMG00000002344, gene:ENSEOMG00000003448 ...
gene:ENSEOMG00000003506, gene:ENSEOMG00000012646, gene:ENSEOMG00000024445, gene:ENSEOMG00000024543
Amaranthaceae Chenopodium quinoa 4 CQ.Regalona.r1.6AG0003600, CQ.Regalona.r1.6AG0012710 ...
CQ.Regalona.r1.6BG0003600, CQ.Regalona.r1.6BG0013450
Anacardiaceae Pistacia vera 7 pistato.v30023880, pistato.v30024130, pistato.v30114380 ...
pistato.v30183540, pistato.v30218020, pistato.v30227990, pistato.v30282540
Apiaceae Apium graveolens 2 Ag5G01944, Ag6G00269
Arecaceae Cocos nucifera 3 COCNU_02G013140, COCNU_03G002670, scaffold020982G000040
Arecaceae Phoenix dactylifera 5 gene-LOC103697618, gene-LOC103715179, gene-LOC103717348 ...
gene-LOC103721133, gene-LOC103723311
Asparagaceae Asparagus officinalis 3 AsparagusV1_02.979.V1.1, AsparagusV1_06.529.V1.1 ...
AsparagusV1_09.216.V1.1
Asteraceae Flaveria trinervia 4 Ftri11G11895, Ftri13G12231, Ftri3G05127, Ftri9G27197
Brassicaceae Arabidopsis thaliana 3 AT2G01620.1, AT3G26000.1, AT3G27290.1
Brassicaceae Eutrema salsugineum 3 Thhalv10004158m.g.v1.0, Thhalv10004262m.g.v1.0 ...
Thhalv10004706m.g.v1.0
Brassicaceae Schrenkiella parvula 3 Sp2g13070.v2.2, Sp2g15220.v2.2, Sp2g16450.v2.2
Brassicaceae Brassica nigra 5 BniB02g066580.2N, BniB04g008120.2N, BniB04g009540.2N ...
BniB04g013590.2N, BniB07g035850.2N
Casuarinaceae Casuarina equisetifolia 3 Ceq02G1952, Ceq07G1286, Ceq09G0832
Casuarinaceae Casuarina glauca 3 Cgl02G2025, Cgl07G1362, Cgl09G0904
Cymodoceaceae Cymodocea nodosa 2 gene.Cymno07g13030, gene.Cymno09g02720
Hydrocharitaceae Thalassia testudinum 2 gene.Thate04g23750, gene.Thate05g23790
Malvaceae Hibiscus hamabo Siebold & Zucc. 1 nbisL1-mrna-10352
Nitrariaceae Nitraria sibirica 5 evm.TU.LG03.1295, evm.TU.LG03.703, evm.TU.LG05.196 ...
evm.TU.LG06.725, evm.TU.LG06.726
Plantaginaceae Plantago ovata 3 Pov_00027803, Pov_00031193, Pov_00041539
Plumbaginaceae Limonium bicolor 6 Lb0G37662, Lb1G00516, Lb1G03062, Lb1G03063, Lb6G31763 ...
Lb7G35306
Poaceae Echinochloa crus-galli 6 AH08.1599, AH09.1365, BH08.1648, BH09.1547, CH08.1791 ...
CH09.1664
Poaceae Eleusine coracana subsp. coracana 2 gene-QOZ80_4AG0312960, gene-QOZ80_4BG0344120
Poaceae Hordeum vulgare 2 HORVU.MOREX.r3.2HG0176810.1, HORVU.MOREX.r3.2HG0193610.1
Poaceae Lolium multiflorum 3 gene-QYE76_031499, gene-QYE76_031976, gene-QYE76_044757
Poaceae Oryza coarctata 4 Oco07G009000, Oco08G008940, Oco15G008700, Oco16G008200
Poaceae Oryza sativa 3 LOC_Os04g40910.1, LOC_Os08g13900.1, LOC_Os08g33140.1
Poaceae Paspalum vaginatum 2 gene-BS78_06G140300, gene-BS78_07G140000
Poaceae Puccinellia tenuiflora 2 Pt_Chr0206858, Pt_Chr0307219
Poaceae Sporobolus alterniflorus 8 Chr16G014260, Chr17G013630, Chr23G010230, Chr25G009430 ...
Chr26G009510, Chr28G005630, Chr29G005590, Chr30G009290
Poaceae Thinopyrum elongatum 2 Tel2E01G596700, Tel2E01G743600
Poaceae Triticum dicoccoides 4 gene_TRIDC2AG049830, gene_TRIDC2AG063010 ...
gene_TRIDC2BG052830, gene_TRIDC2BG066930
Poaceae Triticum aestivum 7 TraesCS2A02G320200.1, TraesCS2A02G438500.1 ...
TraesCS2B02G363000.1, TraesCS2B02G458800.1, TraesCS2D02G343000.1, TraesCS2D02G435600.1, TraesCS2D02G435900.1
Poaceae Zea mays 3 Zm00001eb079200_P001, Zm00001eb179340_P002 ...
Zm00001eb425190_P001
Poaceae Zoysia japonica 4 nbis-gene-16960, nbis-gene-36921, nbis-gene-3921 ...
nbis-gene-7359
Poaceae Zoysia macrostachya 3 Zma_g19940, Zma_g21494, Zma_g24083
Portulacaceae Portulaca oleracea 3 evm.TU.LG13.101, evm.TU.LG13.868, evm.TU.LG21.536
Posidoniaceae Posidonia oceanica 3 gene.Posoc01g07570, gene.Posoc05g01280, gene.Posoc08g00360
Rhizophoraceae Bruguiera sexangula 2 evm.TU.Scaffold_15_RagTag.222, evm.TU.Scaffold_15_RagTag.832
Rhizophoraceae Carallia pectinifolia 4 nbisL1-mrna-23192, nbisL1-mrna-26451, nbisL1-mrna-27020 ...
nbisL1-mrna-27207
Rhizophoraceae Ceriops tagal 3 nbisL1-mrna-11339, nbisL1-mrna-12315, nbisL1-mrna-17972
Rhizophoraceae Ceriops zippeliana 3 nbisL1-mrna-14679, nbisL1-mrna-15569, nbisL1-mrna-17547
Rhizophoraceae Kandelia candel 3 evm.TU.utg000001l.140, evm.TU.utg000001l.457 ...
evm.TU.utg000013l.103
Rhizophoraceae Kandelia obovata 3 Maker00002679, Maker00004700, Maker00006537
Rhizophoraceae Rhizophora apiculata 3 nbisL1-mrna-11202, nbisL1-mrna-11585, nbisL1-mrna-7013
Rhizophoraceae Rhizophora mangle 3 nbisL1-mrna-15947, nbisL1-mrna-17691, nbisL1-mrna-2722
Salicaceae Populus euphratica 5 populus_peu01168, populus_peu01172, populus_peu07653 ...
populus_peu21191, populus_peu21696
Solanaceae Lycium barbarum 5 gene-LOC132613610, gene-LOC132621352, gene-LOC132622898 ...
gene-LOC132624820, gene-LOC132625877
Solanaceae Solanum chilense 4 SOLCI000008400, SOLCI000766300, SOLCI002207600 ...
SOLCI004252400
Solanaceae Solanum pennellii 4 gene-LOC107002760, gene-LOC107009200, gene-LOC107011861 ...
gene-LOC107015555
Tamaricaceae Reaumuria soongarica 1 STRG.19637_chr07_-
Tamaricaceae Tamarix chinensis 3 TC03G0527, TC04G0105, TC04G0418
Zosteraceae Zostera marina 2 Zosma01g08750.v3.1, Zosma05g08000.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.