Basic Information
Locus ID:
nbisL1-mrna-15566
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000194F_pilon | 647345 | 653077 | - | nbisL1-mrna-15566 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 162,169.59 Da | 39.69 | 106.12 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1195 | 1415 | 4.0138E-123 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 584 | 789 | 9.59672E-78 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 272 | 559 | 6.3314E-94 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 882 | 1172 | 7.84381E-68 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 885 | 1124 | 2.0E-24 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1214 | 1362 | 1.1E-32 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 271 | 537 | 1.3E-24 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 611 | 741 | 1.3E-16 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1188 | 1423 | 3.49E-67 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 266 | 566 | 1.83E-31 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 611 | 802 | 2.77E-47 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 884 | 1179 | 2.75E-46 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1180 | 1433 | 3.2E-80 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 590 | 838 | 6.4E-65 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 261 | 568 | 3.7E-47 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 845 | 1178 | 2.3E-52 | IPR036640 |
| SMART | SM00382 | AAA_5 | 615 | 789 | 2.0E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1223 | 1406 | 4.5E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 884 | 1160 | 33.740341 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 275 | 551 | 33.818302 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1197 | 1431 | 18.167397 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 584 | 812 | 19.37454 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 714 | 728 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_034914533.1 | putative ABC transporter C family member 15 [Populus alba] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A4V6ABI6 | ABC-type xenobiotic transporter OS=Populus alba OX=43335 GN=D5086_0000060630 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology