Basic Information
Locus ID:
nbisL1-mrna-1551
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
WD repeat domain phosphoinositide-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 9326971 | 9330899 | - | nbisL1-mrna-1551 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 47,049.63 Da | 56.59 | 78.83 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 298 | 323 | 0.0073 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 76 | 328 | 1.53E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 86 | 409 | 8.7E-20 | IPR015943 |
| SMART | SM00320 | WD40_4 | 240 | 280 | 0.071 | IPR001680 |
| SMART | SM00320 | WD40_4 | 283 | 324 | 0.042 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 75 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_021647869.1 | autophagy-related protein 18a-like [Hevea brasiliensis] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LL30 | Autophagy-related protein 18a-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology