Basic Information
Locus ID:
nbisL1-mrna-15497
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 4552371 | 4555701 | + | nbisL1-mrna-15497 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.42 | 69,240.76 Da | 66.00 | 66.87 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 582 | 624 | 1.46136E-15 | - |
| Pfam | PF13639 | Ring finger domain | 582 | 624 | 9.3E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 577 | 626 | 4.24E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 548 | 628 | 1.4E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 583 | 623 | 3.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 583 | 624 | 11.972923 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 199 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G45180.2 | - | 0 |
| RefSeq | XP_021632693.1 | E3 ubiquitin-protein ligase MBR2 isoform X3 [Manihot esculenta] | 0 |
| Q9ZQF9 | E3 ubiquitin-protein ligase MBR1 OS=Arabidopsis thaliana OX=3702 GN=MBR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9USB5 | RING-type domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_13G122800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_6_RagTag.1863, evm.TU.Scaffold_6_RagTag.1864 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17278 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15497 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3230 |