Basic Information
Locus ID:
nbisL1-mrna-15443
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001811F_pilon | 1005836 | 1006477 | - | nbisL1-mrna-15443 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.19 | 23,958.67 Da | 39.47 | 98.03 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 166 | 207 | 2.4E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 160 | 210 | 1.58E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 159 | 213 | 5.2E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 166 | 206 | 7.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 166 | 207 | 12.076194 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_006373430.3 | E3 ubiquitin-protein ligase SIS3 [Populus trichocarpa] | 0 |
| TrEMBL | A0A8X7Y3X8 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_053985 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1490 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11977 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1166 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11006 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000006l.360 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013999 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20853 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15443 |
| Salicaceae | Populus euphratica | 4 | populus_peu09437, populus_peu24083, populus_peu24085 ... |