Basic Information
Locus ID:
nbisL1-mrna-15426
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 5261706 | 5267430 | + | nbisL1-mrna-15426 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.63 | 59,148.30 Da | 41.55 | 107.97 | 0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17315 | MFS_GLUT_like | 126 | 544 | 2.51077E-135 | - |
| Pfam | PF00083 | Sugar (and other) transporter | 126 | 556 | 7.1E-104 | IPR005828 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 106 | 554 | 7.19E-68 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 114 | 559 | 8.5E-130 | IPR036259 |
| TIGRFAM | TIGR00879 | SP: MFS transporter, sugar porter (SP) family | 105 | 553 | 8.9E-104 | IPR003663 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 123 | 546 | 52.956627 | IPR020846 |
| ProSitePatterns | PS00217 | Sugar transport proteins signature 2. | 221 | 246 | - | IPR005829 |
| PRINTS | PR00171 | Sugar transporter signature | 371 | 381 | 1.4E-22 | IPR003663 |
| PRINTS | PR00171 | Sugar transporter signature | 216 | 235 | 1.4E-22 | IPR003663 |
| PRINTS | PR00171 | Sugar transporter signature | 481 | 493 | 1.4E-22 | IPR003663 |
| PRINTS | PR00171 | Sugar transporter signature | 458 | 479 | 1.4E-22 | IPR003663 |
| PRINTS | PR00171 | Sugar transporter signature | 131 | 141 | 1.4E-22 | IPR003663 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G16150.1 | plastidic GLC translocator. Encodes a putative plastidic glucose transporter. | 0 |
| RefSeq | XP_037494788.1 | plastidic glucose transporter 4 [Jatropha curcas] | 0 |
| Q56ZZ7 | Plastidic glucose transporter 4 OS=Arabidopsis thaliana OX=3702 GN=At5g16150 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2M5P5 | MFS domain-containing protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg39813 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23865 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035501 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g027020 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21617, Sbi_jg22201 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16127 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008735 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl62677, Sgl67238, Sgl67299 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018547, gene:ENSEOMG00000022066 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0019120, CQ.Regalona.r1.2BG0020790 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30191350 |
| Apiaceae | Apium graveolens | 2 | Ag3G01917, Ag4G00531 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G006170, COCNU_03G008820 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103723271, gene-LOC103723589 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.732.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G26976, Ftri6G32214 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G16150.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013176m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g27990.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g046580.2N, BniB08g007710.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0722 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0718 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g09210, gene.Cymno11g01260 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0444s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g01250 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.470 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013925 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G01882 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.785, BH02.779, CH02.880 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0057290 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0225770.2 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_048893, gene-QYE76_049009, gene-QYE76_049011 |
| Poaceae | Oryza coarctata | 2 | Oco01G001320, Oco02G001340 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g04190.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G075900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0205552, Pt_Chr0205637 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G024100, Chr03G003700, Chr05G002060, Chr08G001290 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G083100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG003990, gene_TRIDC3BG006320 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G036600.1, TraesCS3B02G047300.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb125210_P003, Zm00001eb335350_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-12951, nbis-gene-7042 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g7554, Zma_g9916 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.777, evm.TU.LG06.866, evm.TU.LG11.205 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g02120 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.506 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15426 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15807 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-404 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.279 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008398 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13799 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3739 |
| Salicaceae | Populus euphratica | 3 | populus_peu09558, populus_peu09564, populus_peu24975 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621267 |
| Solanaceae | Solanum chilense | 1 | SOLCI005341000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011167 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10690 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0691 |
| Zosteraceae | Zostera marina | 1 | Zosma01g11670.v3.1 |