Basic Information
Locus ID:
nbisL1-mrna-15413
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Protein RMD5 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 3717670 | 3727645 | - | nbisL1-mrna-15413 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 91,482.54 Da | 47.25 | 88.88 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02801 | DUS_like_FMN | 6 | 250 | 4.07326E-93 | IPR035587 |
| CDD | cd16652 | dRing_Rmd5p_like | 753 | 800 | 1.40826E-28 | IPR037683 |
| Pfam | PF13445 | RING-type zinc-finger | 755 | 796 | 2.0E-9 | IPR027370 |
| Pfam | PF10607 | CTLH/CRA C-terminal to LisH motif domain | 577 | 716 | 2.1E-30 | IPR024964 |
| Pfam | PF01207 | Dihydrouridine synthase (Dus) | 8 | 282 | 2.6E-57 | IPR035587 |
| SUPERFAMILY | SSF51395 | FMN-linked oxidoreductases | 5 | 281 | 5.68E-63 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 749 | 811 | 1.77E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 745 | 811 | 8.0E-9 | IPR013083 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 2 | 251 | 4.0E-77 | IPR013785 |
| SMART | SM00668 | ctlh | 576 | 633 | 2.9E-8 | IPR006595 |
| SMART | SM00184 | ring_2 | 755 | 798 | 4.9E-4 | IPR001841 |
| SMART | SM00757 | toby_final6 | 629 | 723 | 5.4E-20 | IPR013144 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 755 | 798 | 8.992817 | IPR001841 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 577 | 633 | 11.294069 | IPR006595 |
| ProSiteProfiles | PS51867 | Gid-type RING finger profile. | 755 | 798 | 13.483645 | IPR044063 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 536 | 568 | 8.114703 | IPR006594 |
| ProSitePatterns | PS01136 | Uncharacterized protein family UPF0034 signature. | 104 | 122 | - | IPR018517 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49640.1 | Aldolase-type TIM barrel family protein. | 0 |
| RefSeq | XP_021630674.1 | protein RMD5 homolog isoform X1 [Manihot esculenta] | 0 |
| Q9T075 | Protein RMD5 homolog OS=Arabidopsis thaliana OX=3702 GN=RMD5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JI27 | Uncharacterized protein MANES_12G120400 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19605 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16443 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah012991 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g152950 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg43019, Sbi_jg45622 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11467 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002062 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl35765, Sgl41033 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003029, gene:ENSEOMG00000012491 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0000260, CQ.Regalona.r1.6BG0000160 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30204270 |
| Apiaceae | Apium graveolens | 1 | Ag5G00387 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G000250 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708392, gene-LOC120106513 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1030.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G12878 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G49640.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010537m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g12460.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g063300.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0408 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0424 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno07g08020, gene.Cymno13g01320 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g22270 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10097, nbisL1-mrna-10594 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2642 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb8G36347 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1685, BH09.1869, CH09.2011 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0309500, gene-QOZ80_4BG0340560 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0183920.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_045230 |
| Poaceae | Oryza coarctata | 2 | Oco07G011380, Oco08G011140 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g44890.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G169100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0301929 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr25G006610, Chr26G011690, Chr30G006510 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G641900 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2AG053780 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G371800.1, TraesCS2B02G388900.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb427250_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-37168 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20113 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1000, evm.TU.LG25.340 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc10g03130, gene.Posoc10g03150 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1737 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17422 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1312 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12030 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.1057 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008097 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15413 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3348 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603147 |
| Solanaceae | Solanum chilense | 1 | SOLCI000119000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020981 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.8862_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0616 |
| Zosteraceae | Zostera marina | 1 | Zosma03g22890.v3.1 |