Basic Information
Locus ID:
nbisL1-mrna-15412
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000134F_pilon | 3222088 | 3223957 | - | nbisL1-mrna-15412 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 65,543.97 Da | 51.47 | 66.48 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 155 | 205 | 1.1417E-14 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 263 | 306 | 3.5E-9 | IPR002867 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 546 | 570 | 2.04E-5 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 260 | 308 | 2.65E-15 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 153 | 232 | 3.85E-16 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 238 | 480 | 6.8E-72 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 237 | 3.0E-16 | IPR013083 |
| Gene3D | G3DSA:2.30.30.380 | - | 517 | 545 | 3.7E-5 | - |
| SMART | SM00547 | zf_4 | 521 | 545 | 2.2E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 546 | 569 | 0.41 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 543 | 572 | 8.445077 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 151 | 314 | 29.465515 | IPR044066 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 519 | 542 | 8.354739 | IPR001876 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 155 | 201 | 9.066582 | IPR001841 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 523 | 542 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 547 | 566 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_034887515.1 | probable E3 ubiquitin-protein ligase ARI8 [Populus alba] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2NHI9 | RBR-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology