Basic Information
Locus ID:
nbisL1-mrna-15408
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
11S globulin seed storage protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 5067478 | 5069880 | + | nbisL1-mrna-15408 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 39,056.38 Da | 31.13 | 95.53 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02243 | cupin_11S_legumin_C | 202 | 357 | 4.86617E-69 | - |
| CDD | cd02242 | cupin_11S_legumin_N | 3 | 174 | 5.24689E-68 | - |
| Pfam | PF00190 | Cupin | 10 | 157 | 1.9E-21 | IPR006045 |
| Pfam | PF00190 | Cupin | 195 | 340 | 7.2E-21 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 12 | 346 | 1.61E-43 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 197 | 361 | 5.7E-44 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 8 | 181 | 3.5E-32 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 194 | 343 | 2.2E-18 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 3 | 159 | 3.4E-30 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 261 | 277 | 5.0E-6 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 279 | 294 | 5.0E-6 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 215 | 235 | 5.0E-6 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G07750.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_006370285.1 | - | 0 |
| TrEMBL | A9P9T4 | 11S globulin seed storage protein 2-like OS=Populus trichocarpa OX=3694 GN=POPTR_001G402600 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology