Basic Information
Locus ID:
nbisL1-mrna-15403
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 3572635 | 3590763 | - | nbisL1-mrna-15403 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 75,568.32 Da | 27.22 | 73.17 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10316 | RGL4_M | 356 | 455 | 3.32104E-32 | IPR029413 |
| CDD | cd10320 | RGL4_N | 35 | 316 | 1.4653E-78 | - |
| CDD | cd10317 | RGL4_C | 467 | 655 | 8.351E-47 | - |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 379 | 448 | 1.5E-24 | IPR029413 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 465 | 653 | 1.7E-49 | IPR029411 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 18 | 225 | 6.1E-89 | IPR010325 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 352 | 455 | 2.35E-10 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 462 | 655 | 1.87E-41 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 38 | 316 | 1.26E-13 | IPR011013 |
| Gene3D | G3DSA:2.70.98.10 | - | 34 | 329 | 2.8E-17 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 463 | 654 | 7.5E-15 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 353 | 452 | 6.7E-10 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22620.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_002308510.2 | rhamnogalacturonate lyase B [Populus trichocarpa] | 0 |
| TrEMBL | B9HCP7 | rhamnogalacturonan endolyase OS=Populus trichocarpa OX=3694 GN=POPTR_006G218500 PE=3 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology