halophFGD

Basic Information

Locus ID: nbisL1-mrna-154

Species & Taxonomic ID: Rhizophora mangle & 40031

Genome Assembly: GCA_037832345.1

Description: E3 ubiquitin-protein ligase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
001172F_pilon	854261	855427	-	nbisL1-mrna-154

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.06	42,371.64 Da	50.59	80.41	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16461	RING-H2_EL5_like	131	174	1.79876E-20	-
Pfam	PF13639	Ring finger domain	131	174	6.3E-13	IPR001841
SUPERFAMILY	SSF57850	RING/U-box	126	189	1.41E-21	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	94	180	2.8E-20	IPR013083
SMART	SM00184	ring_2	132	173	1.2E-5	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	132	174	12.725326	IPR001841
MobiDBLite	mobidb-lite	consensus disorder prediction	182	220	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	235	265	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	354	388	-	-

KEGG Pathway

KO Term:

K10664 (E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description
TAIR	AT3G05200.1	RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6).
RefSeq	XP_021622192.1	E3 ubiquitin-protein ligase ATL6 [Manihot esculenta]
Swiss-Prot	Q8RXX9	E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2
TrEMBL	A0A2P2Q353	Uncharacterized protein MANES_09G164200 OS=Rhizophora mucronata OX=61149 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg1450, jg26595, jg28248, jg29927
Aizoaceae	Mesembryanthemum crystallinum	6	gene_10464, gene_12015, gene_1462, gene_16891, gene_23349 ... gene_23350
Amaranthaceae	Atriplex hortensis	16	Ah005883, Ah005884, Ah005885, Ah005886, Ah005887, Ah005888 ... Ah005889, Ah005890, Ah005892, Ah005903, Ah005904, Ah005905, Ah020881, Ah023788, Ah023789, Ah026719
Amaranthaceae	Beta vulgaris	5	BVRB_1g008260, BVRB_1g008270, BVRB_1g008280, BVRB_1g008300 ... BVRB_6g138820
Amaranthaceae	Salicornia bigelovii	17	Sbi_jg17000, Sbi_jg17001, Sbi_jg17007, Sbi_jg17021 ... Sbi_jg38369, Sbi_jg4115, Sbi_jg4116, Sbi_jg4117, Sbi_jg49683, Sbi_jg49684, Sbi_jg61544, Sbi_jg61551, Sbi_jg61552, Sbi_jg61553, Sbi_jg61567, Sbi_jg61570, Sbi_jg6470
Amaranthaceae	Salicornia europaea	13	Seu_jg15445, Seu_jg17374, Seu_jg271, Seu_jg272, Seu_jg274 ... Seu_jg279, Seu_jg281, Seu_jg295, Seu_jg297, Seu_jg300, Seu_jg5570, Seu_jg5573, Seu_jg5574
Amaranthaceae	Suaeda aralocaspica	14	GOSA_00001073, GOSA_00001074, GOSA_00001075, GOSA_00001076 ... GOSA_00008336, GOSA_00008337, GOSA_00008338, GOSA_00008339, GOSA_00008340, GOSA_00008344, GOSA_00008345, GOSA_00008348, GOSA_00013525, GOSA_00019860
Amaranthaceae	Suaeda glauca	30	Sgl02572, Sgl07727, Sgl10516, Sgl10517, Sgl10518, Sgl15766 ... Sgl15767, Sgl15768, Sgl15769, Sgl24616, Sgl24619, Sgl24628, Sgl24629, Sgl24630, Sgl24633, Sgl24634, Sgl24635, Sgl24643, Sgl29764, Sgl29769, Sgl29772, Sgl29778, Sgl29779, Sgl29782, Sgl29784, Sgl29785, Sgl29786, Sgl34227, Sgl39526, Sgl39570
Amaranthaceae	Chenopodium album	26	gene:ENSEOMG00000001343, gene:ENSEOMG00000004080 ... gene:ENSEOMG00000008238, gene:ENSEOMG00000009858, gene:ENSEOMG00000010986, gene:ENSEOMG00000013210, gene:ENSEOMG00000014843, gene:ENSEOMG00000026390, gene:ENSEOMG00000026739, gene:ENSEOMG00000029321, gene:ENSEOMG00000029699, gene:ENSEOMG00000030039, gene:ENSEOMG00000030519, gene:ENSEOMG00000032912, gene:ENSEOMG00000033934, gene:ENSEOMG00000035429, gene:ENSEOMG00000035540, gene:ENSEOMG00000040270, gene:ENSEOMG00000041061, gene:ENSEOMG00000041656, gene:ENSEOMG00000042620, gene:ENSEOMG00000042750, gene:ENSEOMG00000043889, gene:ENSEOMG00000048915, gene:ENSEOMG00000049044, gene:ENSEOMG00000050308
Amaranthaceae	Chenopodium quinoa	26	CQ.Regalona.r1.1AG0011150, CQ.Regalona.r1.1AG0011160 ... CQ.Regalona.r1.1AG0011170, CQ.Regalona.r1.1AG0011180, CQ.Regalona.r1.1AG0011190, CQ.Regalona.r1.1AG0011200, CQ.Regalona.r1.1BG0014690, CQ.Regalona.r1.1BG0014700, CQ.Regalona.r1.1BG0014710, CQ.Regalona.r1.1BG0014720, CQ.Regalona.r1.4AG0009130, CQ.Regalona.r1.4AG0009160, CQ.Regalona.r1.4AG0009170, CQ.Regalona.r1.4AG0009180, CQ.Regalona.r1.4AG0009270, CQ.Regalona.r1.4AG0009280, CQ.Regalona.r1.4BG0009230, CQ.Regalona.r1.4BG0009240, CQ.Regalona.r1.4BG0009260, CQ.Regalona.r1.4BG0009290, CQ.Regalona.r1.4BG0009380, CQ.Regalona.r1.4BG0009390, CQ.Regalona.r1.4BG0009400, CQ.Regalona.r1.6AG0018910, CQ.Regalona.r1.6BG0019940, CQ.Regalona.r1.7AG0008170
Anacardiaceae	Pistacia vera	1	pistato.v30086920
Apiaceae	Apium graveolens	3	Ag11G03636, Ag1G00452, Ag7G01628
Arecaceae	Cocos nucifera	5	COCNU_02G007060, COCNU_03G007220, COCNU_05G005380 ... COCNU_13G003460, scaffold006700G000010
Arecaceae	Phoenix dactylifera	6	gene-LOC103695609, gene-LOC103701891, gene-LOC103717978 ... gene-LOC103723164, gene-LOC120107687, gene-LOC120108244
Asparagaceae	Asparagus officinalis	1	AsparagusV1_03.333.V1.1
Asteraceae	Flaveria trinervia	5	Ftri10G22862, Ftri18G10184, Ftri18G27853, Ftri1G13054 ... Ftri1G30203
Brassicaceae	Arabidopsis thaliana	12	AT1G22500.1, AT1G35330.1, AT1G72200.1, AT2G34990.1 ... AT2G35000.1, AT3G05200.1, AT4G09100.1, AT4G09110.1, AT4G09120.1, AT4G09130.1, AT4G40070.1, AT5G27420.1
Brassicaceae	Eutrema salsugineum	10	Thhalv10001823m.g.v1.0, Thhalv10004360m.g.v1.0 ... Thhalv10007970m.g.v1.0, Thhalv10016848m.g.v1.0, Thhalv10017962m.g.v1.0, Thhalv10019648m.g.v1.0, Thhalv10020868m.g.v1.0, Thhalv10025687m.g.v1.0, Thhalv10029483m.g.v1.0, Thhalv10029503m.g.v1.0
Brassicaceae	Schrenkiella parvula	14	Sp1g19980.v2.2, Sp1g19990.v2.2, Sp1g20000.v2.2 ... Sp1g20010.v2.2, Sp1g30080.v2.2, Sp2g20640.v2.2, Sp3g04050.v2.2, Sp4g17270.v2.2, Sp4g17280.v2.2, Sp5g27290.v2.2, Sp6g08410.v2.2, Sp6g08420.v2.2, Sp6g08430.v2.2, Sp7g35780.v2.2
Brassicaceae	Brassica nigra	17	BniB01g058370.2N, BniB02g079160.2N, BniB03g014730.2N ... BniB03g030300.2N, BniB03g039780.2N, BniB04g004920.2N, BniB04g037670.2N, BniB04g052090.2N, BniB05g069530.2N, BniB05g069550.2N, BniB06g008880.2N, BniB06g008890.2N, BniB07g033040.2N, BniB07g038430.2N, BniB07g062320.2N, BniB08g035150.2N, BniB08g053530.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq03G2205, Ceq05G0047, Ceq05G0048, Ceq06G1240
Casuarinaceae	Casuarina glauca	4	Cgl03G2348, Cgl05G0041, Cgl05G0042, Cgl06G1301
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno04g09500, gene.Cymno09g04280
Hydrocharitaceae	Thalassia testudinum	11	gene.Thate04g12700, gene.Thate05g11300, gene.Thate05g27180 ... gene.Thate06g16600, gene.Thate07g04530, gene.Thate07g04540, gene.Thate07g04550, gene.Thate07g04560, gene.Thate07g04570, gene.Thate07g04580, gene.Thate07g04600
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-10142, nbisL1-mrna-5227, nbisL1-mrna-7805
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG02.2490, evm.TU.LG02.2491, evm.TU.LG03.2389 ... evm.TU.LG06.1540
Plantaginaceae	Plantago ovata	4	Pov_00027253, Pov_00029739, Pov_00035276, Pov_00040763
Plumbaginaceae	Limonium bicolor	3	Lb1G05870, Lb2G15422, Lb5G27955
Poaceae	Echinochloa crus-galli	14	AH03.2249, AH07.2118, AH07.3549, AH08.1847, BH03.2157 ... BH06.860, BH07.2079, BH07.3368, BH08.1929, CH03.2576, CH06.898, CH07.1976, CH07.3433, CH08.2113
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_2AG0146470, gene-QOZ80_2BG0201980 ... gene-QOZ80_6AG0513890, gene-QOZ80_6AG0538260, gene-QOZ80_6BG0465650, gene-QOZ80_6BG0491500, gene-QOZ80_8AG0634710, gene-QOZ80_8BG0663680
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.5HG0487980.1.CDS1 ... HORVU.MOREX.r3.6HG0560520.1.CDS1, HORVU.MOREX.r3.6HG0616830.1.CDS1, HORVU.MOREX.r3.7HG0664700.1.CDS1
Poaceae	Lolium multiflorum	7	gene-QYE76_005849, gene-QYE76_005874, gene-QYE76_025536 ... gene-QYE76_028585, gene-QYE76_028693, gene-QYE76_031067, gene-QYE76_031092
Poaceae	Oryza coarctata	8	Oco03G022200, Oco04G022850, Oco11G005370, Oco12G005420 ... Oco15G012320, Oco16G010260, Oco17G007070, Oco18G007240
Poaceae	Oryza sativa	4	LOC_Os02g52210.1, LOC_Os06g11450.1, LOC_Os08g37760.1 ... LOC_Os09g29310.1
Poaceae	Paspalum vaginatum	3	gene-BS78_02G210800, gene-BS78_07G168400 ... gene-BS78_10G089900
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0701788, Pt_Chr0701824
Poaceae	Sporobolus alterniflorus	12	Chr09G019410, Chr10G008250, Chr11G020050, Chr13G003670 ... Chr14G003950, Chr14G015560, Chr16G016010, Chr17G015390, Chr20G003870, Chr21G003290, Chr21G014600, Chr29G003660
Poaceae	Thinopyrum elongatum	4	Tel5E01G397200, Tel6E01G272300, Tel6E01G562000 ... Tel7E01G333000
Poaceae	Triticum dicoccoides	9	gene_TRIDC3AG069980, gene_TRIDC3BG079310 ... gene_TRIDC5AG038800, gene_TRIDC5BG040940, gene_TRIDC6AG016330, gene_TRIDC6AG047430, gene_TRIDC6BG021970, gene_TRIDC7AG021930, gene_TRIDC7BG012220
Poaceae	Triticum aestivum	14	TraesCS3B02G549900.1, TraesCS3D02G495500.1.cds1 ... TraesCS5A02G248100.1.cds1, TraesCS5B02G245800.1.cds1, TraesCS5D02G254900.1.cds1, TraesCS6A02G122800.1.cds1, TraesCS6A02G315600.1.cds1, TraesCS6B02G151000.1.cds1, TraesCS6B02G346000.1.cds1, TraesCS6D02G113000.1.cds1, TraesCS6D02G294800.1.cds1, TraesCS7A02G176700.1.cds1, TraesCS7B02G081700.1.cds1, TraesCS7D02G178000.1.cds1
Poaceae	Zea mays	7	Zm00001eb033500_P001, Zm00001eb101180_P001 ... Zm00001eb193860_P001, Zm00001eb255510_P001, Zm00001eb279270_P001, Zm00001eb315600_P001, Zm00001eb423760_P001
Poaceae	Zoysia japonica	7	nbis-gene-17256, nbis-gene-30564, nbis-gene-35078 ... nbis-gene-4830, nbis-gene-52457, nbis-gene-54384, nbis-gene-8636
Poaceae	Zoysia macrostachya	5	Zma_g14478, Zma_g24251, Zma_g29345, Zma_g30477, Zma_g31595
Portulacaceae	Portulaca oleracea	17	evm.TU.LG03.1440, evm.TU.LG04.1847, evm.TU.LG04.1849 ... evm.TU.LG05.265, evm.TU.LG06.508, evm.TU.LG06.509, evm.TU.LG06.510, evm.TU.LG06.518, evm.TU.LG08.612, evm.TU.LG12.99, evm.TU.LG18.1210, evm.TU.LG18.1211, evm.TU.LG20.676, evm.TU.LG20.677, evm.TU.LG20.678, evm.TU.LG22.1410, evm.TU.LG25.1049
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g22590, gene.Posoc04g17740
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_1_RagTag.169, evm.TU.Scaffold_2_RagTag.2030 ... evm.TU.Scaffold_3_RagTag.1099, evm.TU.Scaffold_7_RagTag.957, evm.TU.Scaffold_8_RagTag.785
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-17483, nbisL1-mrna-18964, nbisL1-mrna-886 ... nbisL1-mrna-9453
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-10163, nbisL1-mrna-16619, nbisL1-mrna-18043 ... nbisL1-mrna-9516
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-13708, nbisL1-mrna-20511, nbisL1-mrna-2355 ... nbisL1-mrna-6788
Rhizophoraceae	Kandelia candel	6	add.evm.TU.utg000002l.288, add.evm.TU.utg000008l.10 ... add.evm.TU.utg000009l.25, add.evm.TU.utg000012l.39, add.evm.TU.utg000018l.192, add.evm.TU.utg000019l.255
Rhizophoraceae	Kandelia obovata	3	Maker00001722, Maker00002914, Maker00011488
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-17908, nbisL1-mrna-19898, nbisL1-mrna-20038 ... nbisL1-mrna-21968, nbisL1-mrna-22268, nbisL1-mrna-6134
Rhizophoraceae	Rhizophora mangle	6	nbisL1-mrna-154, nbisL1-mrna-16185, nbisL1-mrna-1788 ... nbisL1-mrna-20282, nbisL1-mrna-3576, nbisL1-mrna-9985
Salicaceae	Populus euphratica	4	populus_peu13441, populus_peu14379, populus_peu14380 ... populus_peu15781
Solanaceae	Lycium barbarum	4	gene-LOC132602507, gene-LOC132627581, gene-LOC132632601 ... gene-LOC132645161
Solanaceae	Solanum chilense	3	SOLCI002105400, SOLCI005418100, SOLCI005634300
Solanaceae	Solanum pennellii	3	gene-LOC107006028, gene-LOC107012641, gene-LOC107018764
Tamaricaceae	Reaumuria soongarica	4	STRG.16450_chr06_+, STRG.16453_chr06_+, STRG.31983_chr09_- ... STRG.8540_chr06_-
Tamaricaceae	Tamarix chinensis	8	TC03G2964, TC03G2965, TC05G2342, TC05G2343, TC06G0774 ... TC09G0178, TC09G0180, TC09G1090
Zosteraceae	Zostera marina	6	Zosma01g07320.v3.1, Zosma01g07330.v3.1, Zosma01g29460.v3.1 ... Zosma02g19290.v3.1, Zosma03g19890.v3.1, Zosma03g34410.v3.1