Basic Information
Locus ID:
nbisL1-mrna-15398
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 4977003 | 4981266 | - | nbisL1-mrna-15398 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.92 | 41,844.89 Da | 45.15 | 89.25 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14379 | UBA1_Rad23_plant | 154 | 203 | 1.36287E-31 | - |
| CDD | cd14382 | UBA2_RAD23_plant | 337 | 379 | 1.82336E-23 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 88 | 1.51639E-28 | - |
| Pfam | PF00240 | Ubiquitin family | 36 | 90 | 3.3E-11 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 160 | 198 | 4.5E-14 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 261 | 317 | 2.1E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 341 | 376 | 8.5E-12 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 157 | 209 | 3.3E-12 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 258 | 324 | 4.97E-22 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 321 | 383 | 4.84E-15 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 95 | 4.6E-18 | IPR029071 |
| Gene3D | G3DSA:1.10.8.10 | - | 153 | 203 | 1.9E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 94 | 3.4E-26 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 251 | 317 | 5.2E-27 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 333 | 380 | 1.6E-22 | - |
| SMART | SM00165 | uba_6 | 341 | 378 | 4.0E-9 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 89 | 1.3E-15 | IPR000626 |
| SMART | SM00727 | CBM | 259 | 302 | 3.6E-6 | IPR006636 |
| SMART | SM00165 | uba_6 | 160 | 200 | 6.3E-6 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 384 | 9.3E-99 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 158 | 201 | 12.402311 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 338 | 379 | 14.595147 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 90 | 14.077005 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 335 | 351 | 1.7E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 367 | 382 | 1.7E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 287 | 309 | 1.7E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 352 | 366 | 1.7E-34 | IPR004806 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_021634606.1 | - | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A2C9WJK3 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology