Basic Information
Locus ID:
nbisL1-mrna-15390
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 3426563 | 3431295 | + | nbisL1-mrna-15390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 93,057.62 Da | 52.07 | 71.10 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 353 | 653 | 7.5E-43 | IPR001394 |
| Pfam | PF01753 | MYND finger | 73 | 110 | 2.7E-9 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 68 | 113 | 1.29E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 350 | 669 | 3.73E-82 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 347 | 663 | 3.1E-88 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 56 | 114 | 1.7E-12 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 73 | 110 | 11.758225 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 353 | 656 | 49.30164 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 354 | 369 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 791 | 812 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_021635256.1 | ubiquitin carboxyl-terminal hydrolase 17 [Hevea brasiliensis] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2JJZ9 | Uncharacterized protein MANES_12G127400 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology