Basic Information
Locus ID:
nbisL1-mrna-15383
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
RING-variant domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 3363818 | 3367549 | + | nbisL1-mrna-15383 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 47,395.11 Da | 54.54 | 88.66 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 232 | 279 | 3.54524E-14 | - |
| Pfam | PF12906 | RING-variant domain | 232 | 278 | 1.3E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 228 | 282 | 3.93E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 215 | 287 | 7.4E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 231 | 279 | 5.3E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 224 | 285 | 20.864481 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 215 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 225 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015573353.1 | uncharacterized protein LOC8262371 isoform X1 [Ricinus communis] | 0 |
| TrEMBL | A0A2P2JWT3 | Uncharacterized protein LOC8262371 isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology