Basic Information
Locus ID:
nbisL1-mrna-15371
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000134F_pilon | 2470608 | 2475399 | - | nbisL1-mrna-15371 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.61 | 137,408.98 Da | 33.56 | 94.25 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 9 | 316 | 2.43401E-73 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 84 | 121 | 1.5E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 126 | 163 | 1.7E-7 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 339 | 767 | 1.4E-126 | IPR006692 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 814 | 1217 | 5.5E-168 | IPR010714 |
| Pfam | PF00400 | WD domain, G-beta repeat | 197 | 230 | 9.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 240 | 275 | 1.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 46 | 79 | 7.5E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 314 | 1.76E-72 | IPR036322 |
| SUPERFAMILY | SSF69322 | Tricorn protease domain 2 | 322 | 594 | 9.81E-11 | - |
| Gene3D | G3DSA:1.25.40.470 | - | 639 | 811 | 9.7E-64 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 318 | 3.5E-124 | IPR015943 |
| SMART | SM00320 | WD40_4 | 40 | 79 | 1.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 236 | 275 | 4.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2 | 37 | 36.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 124 | 163 | 4.6E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 278 | 316 | 180.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 82 | 121 | 1.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 192 | 231 | 2.4E-6 | IPR001680 |
| PIRSF | PIRSF003354 | Alpha-COP | 1 | 1213 | 0.0 | IPR016391 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 89 | 130 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 199 | 240 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 47 | 79 | 10.495596 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 47 | 79 | 12.613797 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 131 | 164 | 12.736494 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 199 | 233 | 10.996502 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 89 | 121 | 11.365591 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 131 | 164 | 15.454345 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 243 | 284 | 14.886235 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 243 | 275 | 11.787407 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 150 | 164 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 150 | 164 | 3.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 108 | 122 | 3.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 262 | 276 | 3.0E-7 | IPR020472 |
| Coils | Coil | Coil | 1124 | 1151 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_021816231.1 | coatomer subunit alpha-1-like [Prunus avium] | 0 |
| Q94A40 | Coatomer subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=At1g62020 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2IV55 | Coatomer subunit alpha OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology