Basic Information
Locus ID:
nbisL1-mrna-15363
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000134F_pilon | 2389122 | 2392517 | - | nbisL1-mrna-15363 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.53 | 52,892.12 Da | 36.06 | 70.76 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 354 | 476 | 2.21645E-34 | IPR033734 |
| CDD | cd09612 | Jacalin | 21 | 151 | 1.79571E-39 | IPR033734 |
| CDD | cd09612 | Jacalin | 180 | 310 | 2.27984E-39 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 21 | 152 | 4.0E-31 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 344 | 477 | 1.1E-30 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 180 | 310 | 6.0E-29 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 11 | 152 | 3.92E-42 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 334 | 477 | 1.83E-41 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 169 | 309 | 1.44E-41 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 327 | 475 | 1.8E-49 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 2 | 150 | 6.3E-54 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 159 | 310 | 1.4E-50 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 21 | 152 | 7.5E-38 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 180 | 311 | 7.9E-35 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 344 | 477 | 8.4E-38 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 169 | 311 | 47.625519 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 10 | 152 | 48.64785 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 333 | 477 | 51.921192 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_021667091.1 | jacalin-related lectin 3-like [Hevea brasiliensis] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2ISF8 | Jacalin-related lectin 3 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology