Basic Information
Locus ID:
nbisL1-mrna-15343
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Ring finger protein (C3H2C3 type) 6
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000134F_pilon | 2131780 | 2133506 | - | nbisL1-mrna-15343 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.00 | 25,737.93 Da | 39.86 | 102.51 | 0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 190 | 232 | 5.44119E-14 | - |
| Pfam | PF13639 | Ring finger domain | 188 | 232 | 2.1E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 184 | 234 | 4.8E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 157 | 235 | 9.7E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 190 | 231 | 1.1E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 190 | 232 | 12.135206 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015574539.1 | NEP1-interacting protein-like 1 [Ricinus communis] | 0 |
| Q9ULK6 | RING finger protein 150 OS=Homo sapiens OX=9606 GN=RNF150 PE=1 SV=2 | 0 | |
| TrEMBL | B9R8F2 | RING-type domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_1599400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_8_RagTag.1302, evm.TU.Scaffold_8_RagTag.1307 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5000 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15343 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.438 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003086, Maker00003506 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3312 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11155 |
| Salicaceae | Populus euphratica | 2 | populus_peu15406, populus_peu33049 |