Basic Information
Locus ID:
nbisL1-mrna-15324
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Hippocampus abundant transcript-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000134F_pilon | 2017329 | 2025975 | - | nbisL1-mrna-15324 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 53,722.47 Da | 32.47 | 104.41 | 0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 64 | 479 | 2.92725E-60 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 64 | 439 | 1.4E-29 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 64 | 481 | 9.02E-40 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 59 | 484 | 1.0E-39 | IPR036259 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_034919526.1 | uncharacterized protein LOC118052636 isoform X1 [Populus alba] | 0 |
| P02980 | Tetracycline resistance protein, class B OS=Escherichia coli OX=562 GN=tetA PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MKK2 | Hippocampus abundant transcript-like protein 1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology