Basic Information
Locus ID:
nbisL1-mrna-15323
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Protein ROOT INITIATION DEFECTIVE 3-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001811F_pilon | 252402 | 253655 | - | nbisL1-mrna-15323 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 44,692.45 Da | 34.84 | 95.90 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 122 | 155 | 0.021 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 178 | 215 | 0.01 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 10 | 312 | 3.85E-42 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 263 | 345 | 6.5E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 254 | 3.5E-31 | IPR015943 |
| SMART | SM00320 | WD40_4 | 267 | 307 | 0.067 | IPR001680 |
| SMART | SM00320 | WD40_4 | 174 | 215 | 0.0089 | IPR001680 |
| SMART | SM00320 | WD40_4 | 79 | 117 | 410.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 218 | 254 | 490.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 120 | 159 | 3.8E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 127 | 157 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 275 | 309 | 9.915599 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 275 | 316 | 12.881143 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 294 | 308 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021660998.1 | protein ROOT INITIATION DEFECTIVE 3-like [Hevea brasiliensis] | 0 |
| Q6ZQA0 | Neurobeachin-like protein 2 OS=Mus musculus OX=10090 GN=Nbeal2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6A6KB81 | WD_REPEATS_REGION domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_011133 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag2G00042 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G013610 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103720694, gene-LOC103720696, gene-LOC120111278 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2221.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G13586 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0538730, gene-QOZ80_6BG0491960 |
| Poaceae | Oryza coarctata | 2 | Oco17G007400, Oco18G007630 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g30090.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G215900 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr10G007920 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10343, nbis-gene-30513 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.133 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11100, nbisL1-mrna-11103 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-12411, nbisL1-mrna-12412, nbisL1-mrna-9616 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10654 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000006l.34 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013812 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20369 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15323 |
| Salicaceae | Populus euphratica | 1 | populus_peu00751 |