Basic Information
Locus ID:
nbisL1-mrna-15312
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001811F_pilon | 151567 | 154343 | + | nbisL1-mrna-15312 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.84 | 26,982.28 Da | 25.32 | 93.10 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF11721 | Malectin domain | 2 | 97 | 2.1E-29 | IPR021720 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 101 | 187 | 5.2E-6 | - |
| Gene3D | G3DSA:2.60.120.430 | - | 1 | 100 | 7.7E-26 | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G29720.1 | Leucine-rich repeat transmembrane protein kinase. | 0 |
| RefSeq | XP_021645398.1 | probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 [Hevea brasiliensis] | 0 |
| Q9ASQ6 | Probable LRR receptor-like serine/threonine-protein kinase At1g29720 OS=Arabidopsis thaliana OX=3702 GN=RFK1 PE=2 SV=3 | 0 | |
| TrEMBL | A0A2P2MSW6 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg19151, jg24283 |
| Brassicaceae | Brassica nigra | 1 | BniB08g059010.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G0910, Ceq04G0500 |
| Poaceae | Echinochloa crus-galli | 1 | CH08.1473 |
| Poaceae | Oryza coarctata | 1 | Oco18G002890 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.130 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11097, nbisL1-mrna-24160 |
| Rhizophoraceae | Rhizophora mangle | 8 | nbisL1-mrna-15312, nbisL1-mrna-15313, nbisL1-mrna-15314 ... |
| Salicaceae | Populus euphratica | 1 | populus_peu26044 |