Basic Information
Locus ID:
nbisL1-mrna-15293
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 2710136 | 2713559 | + | nbisL1-mrna-15293 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 22,124.91 Da | 32.88 | 84.27 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 69 | 131 | 1.1E-17 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 69 | 129 | 1.48E-20 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 42 | 182 | 4.1E-19 | - |
| SMART | SM00220 | serkin_6 | 18 | 198 | 0.0035 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 199 | 14.266167 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G22750.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_011026870.1 | PREDICTED: serine/threonine-protein kinase HT1 isoform X2 [Populus euphratica] | 0 |
| Q9SSA4 | Serine/threonine-protein kinase 54 OS=Arabidopsis thaliana OX=3702 GN=CBC1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P5XWN6 | Protein kinase domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA12907 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1186.V1.1 |
| Poaceae | Thinopyrum elongatum | 4 | Tel2E01G520100, Tel2E01G744300, Tel4E01G265300 ... |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG038860, gene_TRIDC5AG059480 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-28877 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15293 |