Basic Information
Locus ID:
nbisL1-mrna-15290
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000134F_pilon | 1733185 | 1735215 | - | nbisL1-mrna-15290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.09 | 74,516.23 Da | 51.22 | 93.06 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 209 | 246 | 1.89572E-6 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 405 | 646 | 4.5E-38 | IPR000719 |
| Pfam | PF01476 | LysM domain | 210 | 253 | 8.1E-7 | IPR018392 |
| SUPERFAMILY | SSF54106 | LysM domain | 208 | 253 | 2.09E-5 | IPR036779 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 353 | 647 | 7.24E-64 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 357 | 443 | 7.2E-14 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 208 | 262 | 2.5E-8 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 444 | 665 | 4.5E-51 | - |
| SMART | SM00257 | LysM_2 | 209 | 253 | 6.4E-8 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 208 | 252 | 11.059345 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 376 | 654 | 30.590935 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 281 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_002307830.3 | protein LYK5 [Populus trichocarpa] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2YXL4 | Protein LYK5-like OS=Populus deltoides OX=3696 GN=H0E87_011536 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology