Basic Information
Locus ID:
nbisL1-mrna-15255
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Carbohydrate-binding protein of the ER
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 3619048 | 3622358 | + | nbisL1-mrna-15255 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 101,272.14 Da | 41.06 | 84.12 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 503 | 765 | 1.91361E-93 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 502 | 769 | 2.2E-48 | IPR001245 |
| Pfam | PF12819 | Malectin-like domain | 51 | 407 | 1.6E-39 | IPR024788 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 475 | 769 | 6.2E-78 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 574 | 792 | 4.6E-62 | - |
| Gene3D | G3DSA:2.60.120.430 | - | 232 | 407 | 5.7E-25 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 468 | 573 | 2.7E-30 | - |
| Gene3D | G3DSA:2.60.120.430 | - | 48 | 206 | 3.8E-21 | - |
| SMART | SM00220 | serkin_6 | 497 | 773 | 1.8E-35 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 497 | 771 | 35.933586 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 618 | 630 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 503 | 526 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51550.1 | Malectin/receptor-like protein kinase family protein. Encodes a synergid-expressed, plasma-membrane localized receptor-like kinase that accumulates asymetrically in the synergid membrnane at the filiform apparatus and mediates male-female gametophyte interactions during pollen tube reception. | 0 |
| RefSeq | XP_021633095.1 | receptor-like protein kinase FERONIA [Manihot esculenta] | 0 |
| Q9SCZ4 | Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana OX=3702 GN=FER PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9WJC2 | Protein kinase domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_01G094800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0463 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0413 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023687 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_6_RagTag.373, evm.TU.Scaffold_6_RagTag.389 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15255 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-317 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000011l.100 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006847 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-18378, nbisL1-mrna-21417, nbisL1-mrna-21418 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-17235, nbisL1-mrna-22174 |