Basic Information
Locus ID:
nbisL1-mrna-15246
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
pre-mRNA-splicing factor CWC22 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 3554676 | 3559085 | + | nbisL1-mrna-15246 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 82,965.60 Da | 66.91 | 76.44 | -0.92 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02854 | MIF4G domain | 158 | 339 | 1.7E-10 | IPR003890 |
| Pfam | PF02847 | MA3 domain | 446 | 552 | 9.0E-31 | IPR003891 |
| SUPERFAMILY | SSF48371 | ARM repeat | 147 | 387 | 2.63E-64 | IPR016024 |
| Gene3D | G3DSA:1.25.40.180 | - | 115 | 400 | 9.1E-98 | IPR016021 |
| SMART | SM00544 | ma3_7 | 446 | 552 | 1.2E-38 | IPR003891 |
| SMART | SM00543 | if4_15 | 157 | 340 | 2.0E-36 | IPR003890 |
| ProSiteProfiles | PS51366 | MI domain profile. | 445 | 561 | 24.552179 | IPR003891 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 648 | 713 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 398 | 438 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 658 | 686 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 404 | 433 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 687 | 707 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 124 | - | - |
| Coils | Coil | Coil | 418 | 438 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80930.1 | MIF4G domain-containing protein / MA3 domain-containing protein. | 0 |
| RefSeq | XP_021622939.1 | pre-mRNA-splicing factor CWC22 homolog [Manihot esculenta] | 0 |
| Q9HCG8 | Pre-mRNA-splicing factor CWC22 homolog OS=Homo sapiens OX=9606 GN=CWC22 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2C9VAX9 | MI domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_09G108700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg16292, jg1703 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23440 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010036 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g175420 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg4516, Sbi_jg49414, Sbi_jg8544 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5930 |
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00006241, GOSA_00006242, GOSA_00006243, GOSA_00012777 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02555, Sgl07710 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000005395, gene:ENSEOMG00000033023 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.7AG0001500, CQ.Regalona.r1.8AG0002580 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30114300 |
| Apiaceae | Apium graveolens | 7 | Ag10G01920, Ag1G00323, Ag2G00835, Ag2G01864, Ag4G01927 ... |
| Arecaceae | Cocos nucifera | 3 | COCNU_04G007010, COCNU_04G007020, COCNU_12G004610 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103706269, gene-LOC103706325 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.177.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri17G21150, Ftri8G09622, Ftri9G19813 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G52325.1, AT1G80930.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10018086m.g.v1.0, Thhalv10020518m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp3g07760.v2.2, Sp5g34810.v2.2, Sp6g06350.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g055180.2N, BniB01g055370.2N, BniB03g023340.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq01G2108, Ceq02G2562, Ceq05G1995 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G2307, Cgl02G2645 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g11540 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0363s00002.v1.0, Dusal.0363s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g04180 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-4350, nbisL1-mrna-5368 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.137 |
| Plantaginaceae | Plantago ovata | 5 | Pov_00006619, Pov_00015059, Pov_00021791, Pov_00021792 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G21271 |
| Poaceae | Echinochloa crus-galli | 8 | AH01.5045, AH02.1157, AH05.543, AH09.358, BH05.594, CH05.680 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_3AG0209210, gene-QOZ80_3AG0224900 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.2HG0104130.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 7 | gene-QYE76_005583, gene-QYE76_038330, gene-QYE76_038331 ... |
| Poaceae | Oryza coarctata | 6 | Oco01G010170, Oco21G001220, Oco23G004490, Oco23G004720 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os11g05394.1, LOC_Os12g15420.1, LOC_Os12g17550.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G138900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0704871, Pt_Chr0704872 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G032180, Chr07G031230, Chr12G032380 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G704300 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2BG009050, gene_TRIDC3AG063170 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2D02G069200.1.cds1, TraesCS3A02G446300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb410000_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-15599, nbis-gene-15600, nbis-gene-16695 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2416 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.431, evm.TU.LG17.428 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g26790 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_6_RagTag.351, evm.TU.Scaffold_6_RagTag.354 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-15246, nbisL1-mrna-16008, nbisL1-mrna-16107 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-8830, nbisL1-mrna-8831, nbisL1-mrna-9230 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-314 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000011l.87, evm.TU.utg000011l.209 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007842 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11745 |
| Rhizophoraceae | Rhizophora mangle | 7 | nbisL1-mrna-17238, nbisL1-mrna-17254, nbisL1-mrna-17256 ... |
| Salicaceae | Populus euphratica | 1 | populus_peu25410 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132620462, gene-LOC132625795 |
| Solanaceae | Solanum chilense | 3 | SOLCI001687100, SOLCI006502300, SOLCI006560000 |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107013725, gene-LOC107014972, gene-LOC107018086 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.28673_chr04_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G3732 |
| Zosteraceae | Zostera marina | 2 | Zosma01g39300.v3.1, Zosma04g06740.v3.1 |