Basic Information
Locus ID:
nbisL1-mrna-1522
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000017F_pilon | 3618908 | 3619946 | + | nbisL1-mrna-1522 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.73 | 33,019.58 Da | 58.18 | 86.91 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 122 | 153 | 0.11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 213 | 244 | 0.015 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 19 | 287 | 1.69E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 293 | 8.2E-38 | IPR015943 |
| SMART | SM00320 | WD40_4 | 204 | 244 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 67 | 112 | 0.39 | IPR001680 |
| SMART | SM00320 | WD40_4 | 115 | 153 | 6.3E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 211 | 247 | 9.045603 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 211 | 253 | 11.009724 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 231 | 245 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_021657892.1 | WD repeat-containing protein LWD1 [Hevea brasiliensis] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2X978 | WD_REPEATS_REGION domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_024816 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology