halophFGD

Basic Information

Locus ID: nbisL1-mrna-15213

Species & Taxonomic ID: Carallia pectinifolia & 98586

Genome Assembly: GCA_037832335.1

Description: Protein of unknown function (DUF4101)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr07	3262211	3264702	+	nbisL1-mrna-15213

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.55	46,514.23 Da	51.80	99.93	0.03

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	4	41	6.6E-6	IPR001810
SUPERFAMILY	SSF81383	F-box domain	3	48	2.75E-9	IPR036047
SUPERFAMILY	SSF52058	L domain-like	108	303	2.58E-6	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	95	386	1.0E-7	IPR032675
SMART	SM00256	fbox_2	8	48	0.0086	IPR001810
ProSiteProfiles	PS50181	F-box domain profile.	2	53	9.25902	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K01899 (succinyl-CoA synthetase alpha subunit [EC:6.2.1.4 6.2.1.5])

Pathway:

ko00020 (Citrate cycle (TCA cycle)) map00020 (Citrate cycle (TCA cycle)) ko00640 (Propanoate metabolism) map00640 (Propanoate metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01200 (Carbon metabolism) map01200 (Carbon metabolism)

Module:

M00009 (Citrate cycle (TCA cycle, Krebs cycle)) M00011 (Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate)

Reaction:

R00432 (GTP + Succinate + CoA <=> GDP + Orthophosphate + Succinyl-CoA) R00727 (ITP + Succinate + CoA <=> IDP + Orthophosphate + Succinyl-CoA)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G02910.2	F-box/RNI-like superfamily protein.
RefSeq	XP_016686309.2	-
Swiss-Prot	Q9LYZ4	F-box/LRR-repeat protein At5g02910 OS=Arabidopsis thaliana OX=3702 GN=At5g02910 PE=2 SV=1
TrEMBL	A0A2P5WHT1	-

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg14286
Aizoaceae	Mesembryanthemum crystallinum	19	gene_10458, gene_11008, gene_11009, gene_12185, gene_13377 ... gene_18085, gene_19771, gene_20430, gene_20753, gene_22600, gene_25484, gene_26574, gene_4495, gene_5824, gene_6796, gene_7190, gene_7955, gene_8268, gene_9816
Amaranthaceae	Atriplex hortensis	17	Ah000293, Ah002139, Ah004307, Ah004880, Ah006498, Ah009144 ... Ah009922, Ah013218, Ah019945, Ah021738, Ah027810, Ah027812, Ah035382, Ah035438, Ah035658, Ah035664, Ah038416
Amaranthaceae	Beta vulgaris	4	BVRB_2g026260, BVRB_2g026340, BVRB_5g103430, BVRB_9g210070
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg21848, Sbi_jg39810, Sbi_jg40003, Sbi_jg40004 ... Sbi_jg40219, Sbi_jg50203, Sbi_jg5068, Sbi_jg6847
Amaranthaceae	Salicornia europaea	10	Seu_jg13014, Seu_jg14515, Seu_jg14517, Seu_jg14520 ... Seu_jg14522, Seu_jg14525, Seu_jg15901, Seu_jg15904, Seu_jg1803, Seu_jg18700
Amaranthaceae	Suaeda aralocaspica	7	GOSA_00003750, GOSA_00004938, GOSA_00004941, GOSA_00008031 ... GOSA_00010662, GOSA_00023800, GOSA_00025850
Amaranthaceae	Suaeda glauca	24	Sgl01494, Sgl06619, Sgl06658, Sgl31341, Sgl35868, Sgl35890 ... Sgl36202, Sgl36672, Sgl38567, Sgl41183, Sgl41203, Sgl41483, Sgl41977, Sgl46756, Sgl54285, Sgl54327, Sgl55508, Sgl57500, Sgl59627, Sgl61358, Sgl73230, Sgl76747, Sgl78397, Sgl80898
Amaranthaceae	Chenopodium album	32	gene:ENSEOMG00000002363, gene:ENSEOMG00000004105 ... gene:ENSEOMG00000006869, gene:ENSEOMG00000010307, gene:ENSEOMG00000015059, gene:ENSEOMG00000019185, gene:ENSEOMG00000019442, gene:ENSEOMG00000020049, gene:ENSEOMG00000020961, gene:ENSEOMG00000023510, gene:ENSEOMG00000023809, gene:ENSEOMG00000024190, gene:ENSEOMG00000025614, gene:ENSEOMG00000025669, gene:ENSEOMG00000029442, gene:ENSEOMG00000030111, gene:ENSEOMG00000031474, gene:ENSEOMG00000036234, gene:ENSEOMG00000037364, gene:ENSEOMG00000037634, gene:ENSEOMG00000037917, gene:ENSEOMG00000038626, gene:ENSEOMG00000038757, gene:ENSEOMG00000039284, gene:ENSEOMG00000039469, gene:ENSEOMG00000039764, gene:ENSEOMG00000048859, gene:ENSEOMG00000051065, gene:ENSEOMG00000051359, gene:ENSEOMG00000051524, gene:ENSEOMG00000051670, gene:ENSEOMG00000051752
Amaranthaceae	Chenopodium quinoa	32	CQ.Regalona.r1.1BG0009980, CQ.Regalona.r1.1BG0010980 ... CQ.Regalona.r1.1BG0012100, CQ.Regalona.r1.2AG0009460, CQ.Regalona.r1.2AG0009470, CQ.Regalona.r1.2AG0017320, CQ.Regalona.r1.2AG0017540, CQ.Regalona.r1.2AG0017560, CQ.Regalona.r1.2AG0017620, CQ.Regalona.r1.2AG0017630, CQ.Regalona.r1.2AG0017640, CQ.Regalona.r1.2AG0017680, CQ.Regalona.r1.2AG0017700, CQ.Regalona.r1.2AG0019710, CQ.Regalona.r1.2AG0019720, CQ.Regalona.r1.2BG0019280, CQ.Regalona.r1.3BG0012500, CQ.Regalona.r1.4BG0001390, CQ.Regalona.r1.5AG0025440, CQ.Regalona.r1.5BG0018730, CQ.Regalona.r1.5BG0025440, CQ.Regalona.r1.5BG0027000, CQ.Regalona.r1.5BG0027890, CQ.Regalona.r1.6BG0022870, CQ.Regalona.r1.7AG0006180, CQ.Regalona.r1.7AG0014150, CQ.Regalona.r1.7AG0014170, CQ.Regalona.r1.7BG0003280, CQ.Regalona.r1.9AG0000620, CQ.Regalona.r1.9AG0004540, CQ.Regalona.r1.9BG0006070, CQ.Regalona.r1.9BG0017700
Anacardiaceae	Pistacia vera	2	pistato.v30066350, pistato.v30138040
Apiaceae	Apium graveolens	2	Ag5G00998, Ag5G01801
Arecaceae	Cocos nucifera	2	COCNU_05G005250, scaffold003886G000020
Arecaceae	Phoenix dactylifera	2	gene-LOC103698306, gene-LOC103723046
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.3428.V1.1, AsparagusV1_04.222.V1.1 ... AsparagusV1_05.3351.V1.1
Asteraceae	Flaveria trinervia	1	Ftri9G10297
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate01g33070
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG10.1020
Plantaginaceae	Plantago ovata	38	Pov_00000480, Pov_00000484, Pov_00000485, Pov_00000490 ... Pov_00000494, Pov_00000495, Pov_00000537, Pov_00000582, Pov_00004013, Pov_00005306, Pov_00010869, Pov_00011608, Pov_00012977, Pov_00013098, Pov_00013101, Pov_00013107, Pov_00016009, Pov_00016011, Pov_00016012, Pov_00016013, Pov_00016015, Pov_00017961, Pov_00019051, Pov_00022904, Pov_00022962, Pov_00023248, Pov_00027570, Pov_00029107, Pov_00029375, Pov_00031439, Pov_00032266, Pov_00032267, Pov_00033445, Pov_00035481, Pov_00037471, Pov_00037494, Pov_00038395, Pov_00040721
Poaceae	Echinochloa crus-galli	41	AH01.2649, AH01.431, AH01.4703, AH02.2603, AH06.628 ... AH06.686, AH07.426, AH07.606, AH07.651, BH01.1015, BH02.4540, BH04.191, BH05.127, BH05.130, BH05.131, BH06.692, BH06.758, BH07.551, BH08.243, BH08.247, BH08.253, CH01.1627, CH01.3196, CH01.851, CH02.4589, CH02.4590, CH02.953, CH04.1058, CH05.4547, CH06.714, CH06.784, CH06.788, CH07.1956, CH07.1957, CH07.1960, CH07.572, CH08.1310, CH08.1321, CH08.298, CH08.299, CH08.617
Poaceae	Eleusine coracana subsp. coracana	9	gene-QOZ80_2BG0164360, gene-QOZ80_2BG0171640 ... gene-QOZ80_3BG0285080, gene-QOZ80_4BG0329700, gene-QOZ80_4BG0345030, gene-QOZ80_5BG0426990, gene-QOZ80_6AG0512710, gene-QOZ80_6BG0464650, gene-QOZ80_8BG0646790
Poaceae	Hordeum vulgare	15	HORVU.MOREX.r3.2HG0215140.1, HORVU.MOREX.r3.2HG0215160.1 ... HORVU.MOREX.r3.3HG0231750.1, HORVU.MOREX.r3.3HG0251800.1, HORVU.MOREX.r3.3HG0251810.1, HORVU.MOREX.r3.3HG0297910.1, HORVU.MOREX.r3.5HG0535940.1, HORVU.MOREX.r3.5HG0535970.1, HORVU.MOREX.r3.5HG0535980.1, HORVU.MOREX.r3.5HG0536050.1, HORVU.MOREX.r3.7HG0668640.1, HORVU.MOREX.r3.7HG0746750.1, HORVU.MOREX.r3.7HG0746760.1, HORVU.MOREX.r3.7HG0746900.1, HORVU.MOREX.r3.7HG0751350.1
Poaceae	Lolium multiflorum	28	gene-QYE76_001889, gene-QYE76_004900, gene-QYE76_016296 ... gene-QYE76_025254, gene-QYE76_026063, gene-QYE76_027412, gene-QYE76_027421, gene-QYE76_027439, gene-QYE76_030244, gene-QYE76_030245, gene-QYE76_032875, gene-QYE76_036254, gene-QYE76_036404, gene-QYE76_036798, gene-QYE76_047527, gene-QYE76_051589, gene-QYE76_056241, gene-QYE76_056245, gene-QYE76_056248, gene-QYE76_057193, gene-QYE76_059178, gene-QYE76_059683, gene-QYE76_068096, gene-QYE76_069025, gene-QYE76_069921, gene-QYE76_069922, gene-QYE76_070032, gene-QYE76_070280
Poaceae	Oryza coarctata	29	Oco01G027380, Oco03G004350, Oco05G014380, Oco06G011870 ... Oco06G023840, Oco07G005010, Oco07G019170, Oco08G005040, Oco11G004680, Oco11G004690, Oco11G017340, Oco12G004730, Oco12G004740, Oco13G001770, Oco13G001810, Oco13G001820, Oco13G007450, Oco14G001800, Oco14G001810, Oco14G001890, Oco14G001910, Oco14G001930, Oco15G003390, Oco17G005950, Oco17G009810, Oco20G000340, Oco20G000350, Oco22G007870, Ocoptg000061lG000130
Poaceae	Oryza sativa	23	LOC_Os01g37260.2, LOC_Os03g25394.1, LOC_Os03g40060.1 ... LOC_Os03g50470.1, LOC_Os03g51270.1, LOC_Os04g36910.1, LOC_Os06g06600.1, LOC_Os06g10140.1, LOC_Os06g10290.1, LOC_Os06g10300.1, LOC_Os06g49930.1, LOC_Os06g50250.1, LOC_Os07g06500.1, LOC_Os07g06670.1, LOC_Os07g06730.1, LOC_Os07g06900.1, LOC_Os07g22910.1, LOC_Os07g26000.1, LOC_Os08g25650.1, LOC_Os11g33310.1, LOC_Os11g33320.1, LOC_Os11g47660.1, LOC_Os12g03390.1
Poaceae	Paspalum vaginatum	21	gene-BS78_01G195100, gene-BS78_01G412100, gene-BS78_K140400 ... gene-BS78_02G140400, gene-BS78_03G047400, gene-BS78_03G183000, gene-BS78_03G321400, gene-BS78_04G066200, gene-BS78_05G149800, gene-BS78_05G159500, gene-BS78_05G159600, gene-BS78_06G288100, gene-BS78_07G025300, gene-BS78_08G004500, gene-BS78_08G007700, gene-BS78_08G007900, gene-BS78_08G008300, gene-BS78_09G231600, gene-BS78_10G030000, gene-BS78_10G079300, gene-BS78_10G079600
Poaceae	Puccinellia tenuiflora	41	Pt_Chr0101613, Pt_Chr0101693, Pt_Chr0103204, Pt_Chr0106725 ... Pt_Chr0201245, Pt_Chr0201248, Pt_Chr0201251, Pt_Chr0201255, Pt_Chr0201286, Pt_Chr0202916, Pt_Chr0204883, Pt_Chr0205054, Pt_Chr0206942, Pt_Chr0207083, Pt_Chr0207084, Pt_Chr0207559, Pt_Chr0300469, Pt_Chr0300470, Pt_Chr0300494, Pt_Chr0302737, Pt_Chr0302782, Pt_Chr0302785, Pt_Chr0303592, Pt_Chr0303618, Pt_Chr0305041, Pt_Chr0306918, Pt_Chr0306923, Pt_Chr0306929, Pt_Chr0306930, Pt_Chr0306931, Pt_Chr0401232, Pt_Chr0401305, Pt_Chr0401646, Pt_Chr0401698, Pt_Chr0401714, Pt_Chr0404871, Pt_Chr0405073, Pt_Chr0405074, Pt_Chr0405929, Pt_Chr0600341, Pt_Chr0600382
Poaceae	Sporobolus alterniflorus	21	Chr04G000310, Chr04G033040, Chr07G000360, Chr07G010450 ... Chr07G032150, Chr11G020680, Chr11G020710, Chr17G008270, Chr17G008280, Chr17G008290, Chr17G008300, Chr20G001960, Chr20G012140, Chr20G012160, Chr23G014440, Chr23G014460, Chr24G001090, Chr26G005350, Chr28G001280, Chr29G002300, Chr29G010550
Poaceae	Thinopyrum elongatum	37	Tel1E01G622400, Tel1E01G729800, Tel2E01G1003200 ... Tel2E01G1003600, Tel2E01G1004100, Tel2E01G1004500, Tel2E01G1006300, Tel2E01G1006400, Tel2E01G636300, Tel2E01G830900, Tel2E01G832000, Tel3E01G296800, Tel3E01G297200, Tel3E01G419300, Tel3E01G588500, Tel3E01G651900, Tel3E01G803500, Tel4E01G467300, Tel4E01G646500, Tel5E01G070500, Tel5E01G070900, Tel5E01G105300, Tel5E01G874600, Tel5E01G874900, Tel6E01G627800, Tel6E01G627900, Tel6E01G628200, Tel6E01G787400, Tel7E01G1011200, Tel7E01G327900, Tel7E01G370200, Tel7E01G921100, Tel7E01G921200, Tel7E01G921900, Tel7E01G923400, Tel7E01G925800, Tel7E01G926000
Poaceae	Triticum dicoccoides	32	gene_TRIDC1AG056050, gene_TRIDC1AG063360 ... gene_TRIDC1BG019520, gene_TRIDC1BG027100, gene_TRIDC1BG028300, gene_TRIDC2AG053030, gene_TRIDC2AG058880, gene_TRIDC2AG058890, gene_TRIDC2BG056000, gene_TRIDC3AG053170, gene_TRIDC3BG059860, gene_TRIDC4AG048790, gene_TRIDC4AG048800, gene_TRIDC5AG004230, gene_TRIDC5BG004390, gene_TRIDC5BG082070, gene_TRIDC5BG082140, gene_TRIDC6AG004090, gene_TRIDC6AG053150, gene_TRIDC6BG061690, gene_TRIDC7AG020180, gene_TRIDC7AG020270, gene_TRIDC7AG020280, gene_TRIDC7AG020300, gene_TRIDC7AG025110, gene_TRIDC7AG025550, gene_TRIDC7AG073970, gene_TRIDC7AG074000, gene_TRIDC7AG074120, gene_TRIDC7BG010200, gene_TRIDC7BG015940, gene_TRIDC7BG070460
Poaceae	Triticum aestivum	83	TraesCS1A02G381300.1, TraesCS1A02G431800.1 ... TraesCS1B02G132200.1, TraesCS1B02G165100.1, TraesCS1B02G171100.2, TraesCS1B02G467400.1, TraesCS1D02G113500.1, TraesCS1D02G313200.1, TraesCS1D02G441100.4, TraesCS2A02G366400.1, TraesCS2A02G407800.1, TraesCS2A02G575000.1, TraesCS2A02G575300.1, TraesCS2B02G611900.2, TraesCS2B02G612000.1, TraesCS2D02G586000.2, TraesCS3A02G369800.1, TraesCS3A02G386700.1, TraesCS3B02G198600.1, TraesCS3B02G401700.1, TraesCS3B02G422100.1, TraesCS3D02G081600.1, TraesCS3D02G173900.1, TraesCS3D02G382400.1, TraesCS4A02G322700.1, TraesCS4A02G322800.1, TraesCS4A02G322900.1, TraesCS4A02G323000.1, TraesCS4A02G323200.1, TraesCS4A02G323300.1, TraesCS4A02G462700.1, TraesCS4B02G258700.2, TraesCS4B02G258800.1, TraesCS4B02G259000.1, TraesCS4B02G397200.1, TraesCS5A02G029500.1, TraesCS5B02G027900.1, TraesCS5B02G028100.1, TraesCS5B02G044900.1, TraesCS5B02G050000.1, TraesCS5B02G050100.1.cds1, TraesCS5B02G555200.1, TraesCS5B02G555300.1, TraesCS5B02G555400.1, TraesCS5B02G555500.1, TraesCS5B02G555600.1, TraesCS5B02G555700.1, TraesCS5D02G037200.1, TraesCS5D02G049900.1, TraesCS5D02G055900.1, TraesCS6A02G033900.1, TraesCS6A02G353300.1, TraesCS6A02G373100.1, TraesCS6B02G047500.1, TraesCS6B02G386000.1, TraesCS6D02G039400.2, TraesCS6D02G039700.1, TraesCS6D02G335700.1, TraesCS7A02G163000.1, TraesCS7A02G163100.1, TraesCS7A02G163200.1, TraesCS7A02G198500.1, TraesCS7A02G202000.2, TraesCS7A02G529600.1, TraesCS7A02G529700.1, TraesCS7B02G068500.1, TraesCS7B02G068900.1, TraesCS7B02G069000.1, TraesCS7B02G104000.1, TraesCS7B02G108800.1, TraesCS7B02G405900.1, TraesCS7B02G446300.1, TraesCS7B02G446700.1, TraesCS7B02G446800.2, TraesCS7D02G165200.1.cds1, TraesCS7D02G205100.1, TraesCS7D02G517100.1, TraesCS7D02G517400.2, TraesCS7D02G517500.2, TraesCS7D02G517700.2, TraesCS7D02G518700.1, TraesCS7D02G537700.1, TraesCSU02G029500.1
Poaceae	Zea mays	4	Zm00001eb066980_P001, Zm00001eb066990_P001 ... Zm00001eb067000_P001, Zm00001eb067010_P001
Poaceae	Zoysia japonica	3	nbis-gene-17448, nbis-gene-37439, nbis-gene-39147
Poaceae	Zoysia macrostachya	3	Zma_g20834, Zma_g22437, Zma_g22438
Portulacaceae	Portulaca oleracea	3	evm.TU.LG01.2856, evm.TU.LG02.511, evm.TU.LG09.1755
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_10_RagTag.1220, evm.TU.Scaffold_6_RagTag.353
Rhizophoraceae	Carallia pectinifolia	17	nbisL1-mrna-12368, nbisL1-mrna-15199, nbisL1-mrna-15212 ... nbisL1-mrna-15213, nbisL1-mrna-15217, nbisL1-mrna-15240, nbisL1-mrna-19276, nbisL1-mrna-19547, nbisL1-mrna-19558, nbisL1-mrna-19588, nbisL1-mrna-19592, nbisL1-mrna-19665, nbisL1-mrna-19668, nbisL1-mrna-22697, nbisL1-mrna-22698, nbisL1-mrna-23267, nbisL1-mrna-4238
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-14514, nbisL1-mrna-5921
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-17017, nbisL1-mrna-4956
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000008l.479, add.evm.TU.utg000008l.481 ... add.evm.TU.utg000013l.137, evm.TU.utg000023l.261
Rhizophoraceae	Kandelia obovata	2	Maker00006285, Maker00009125
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-16358, nbisL1-mrna-17009, nbisL1-mrna-21425 ... nbisL1-mrna-630
Rhizophoraceae	Rhizophora mangle	7	nbisL1-mrna-17255, nbisL1-mrna-17257, nbisL1-mrna-17259 ... nbisL1-mrna-17261, nbisL1-mrna-17262, nbisL1-mrna-17264, nbisL1-mrna-8821
Salicaceae	Populus euphratica	11	populus_peu02394, populus_peu03614, populus_peu05442 ... populus_peu08713, populus_peu08714, populus_peu08718, populus_peu25171, populus_peu25174, populus_peu25552, populus_peu25557, populus_peu28783
Solanaceae	Lycium barbarum	5	gene-LOC132601448, gene-LOC132601626, gene-LOC132612930 ... gene-LOC132614425, gene-LOC132631323
Solanaceae	Solanum chilense	3	SOLCI002197600, SOLCI003375000, SOLCI007094100
Solanaceae	Solanum pennellii	4	gene-LOC107006362, gene-LOC107015627, gene-LOC107017004 ... gene-LOC107017005
Tamaricaceae	Reaumuria soongarica	4	MSTRG.19954_chr11_+, MSTRG.20796_chr11_-, MSTRG.9786_chr05_- ... STRG.12791_chr02_-
Tamaricaceae	Tamarix chinensis	2	TC08G2438, TC08G2562