Basic Information
Locus ID:
nbisL1-mrna-15179
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Translation initiation factor eIF-2B subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001334F_pilon | 1351978 | 1358766 | + | nbisL1-mrna-15179 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.95 | 52,228.23 Da | 36.21 | 99.67 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04652 | LbH_eIF2B_gamma_C | 393 | 471 | 1.09002E-33 | - |
| Pfam | PF12804 | MobA-like NTP transferase domain | 5 | 178 | 2.1E-13 | IPR025877 |
| Pfam | PF00132 | Bacterial transferase hexapeptide (six repeats) | 409 | 444 | 5.8E-4 | IPR001451 |
| SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 4 | 448 | 3.94E-34 | IPR029044 |
| Gene3D | G3DSA:2.160.10.10 | Hexapeptide repeat proteins | 371 | 479 | 4.6E-18 | - |
| Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 1 | 368 | 4.2E-34 | IPR029044 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19485.1 | transferases;nucleotidyltransferases. | 0 |
| RefSeq | XP_048232200.1 | translation initiation factor eIF-2B subunit gamma isoform X1 [Ricinus communis] | 0 |
| A5PJI7 | Translation initiation factor eIF2B subunit gamma OS=Bos taurus OX=9913 GN=EIF2B3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2MCA0 | Uncharacterized protein MANES_05G199900 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8487 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10167 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005110 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g074130 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17356, Sbi_jg61999 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg619 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015510 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24321, Sgl29494 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011372, gene:ENSEOMG00000027834 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0002570, CQ.Regalona.r1.4BG0002670 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30208230 |
| Apiaceae | Apium graveolens | 1 | Ag1G01041 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G016740 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720591 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.334.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G18995 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G19485.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013503m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g24920.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g043210.2N, BniB05g044250.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1677 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1671 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g02470 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0181s00028.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g09650 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.70 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026665 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G15872 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.1676, BH06.1593, CH06.1749 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0530950, gene-QOZ80_6BG0484770 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0711390.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_033875 |
| Poaceae | Oryza coarctata | 2 | Oco11G009690, Oco12G009650 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g23160.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G145900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0402793 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr11G009500, Chr14G011870, Chr21G011820, Chr30G014140 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G584200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG047490, gene_TRIDC7BG040120 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G331800.1, TraesCS7B02G243400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb051600_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-47907 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30122 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1400, evm.TU.LG22.299 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g07140 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.455 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24295, nbisL1-mrna-30455 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12927 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19716 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.339, evm.TU.utg000027l.291 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015502, Maker00017894 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-4260, nbisL1-mrna-5695 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11937, nbisL1-mrna-15179 |
| Salicaceae | Populus euphratica | 2 | populus_peu01817, populus_peu35999 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600750 |
| Solanaceae | Solanum chilense | 1 | SOLCI004255000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002874 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.27989_chr04_+, STRG.31481_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2955 |
| Zosteraceae | Zostera marina | 1 | Zosma06g21750.v3.1 |