Basic Information
Locus ID:
nbisL1-mrna-15172
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
WRKY transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 2877921 | 2881440 | - | nbisL1-mrna-15172 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.17 | 59,292.34 Da | 55.48 | 59.36 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03106 | WRKY DNA -binding domain | 433 | 489 | 5.1E-25 | IPR003657 |
| Pfam | PF03106 | WRKY DNA -binding domain | 245 | 301 | 3.9E-26 | IPR003657 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 424 | 492 | 5.36E-29 | IPR036576 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 242 | 303 | 1.31E-26 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 417 | 493 | 1.4E-35 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 229 | 304 | 7.8E-29 | IPR036576 |
| SMART | SM00774 | WRKY_cls | 244 | 302 | 5.3E-38 | IPR003657 |
| SMART | SM00774 | WRKY_cls | 432 | 491 | 6.1E-39 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 427 | 492 | 37.768742 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 239 | 303 | 24.764847 | IPR003657 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 374 | 391 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 353 | 391 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 315 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G03340.1 | WRKY DNA-binding protein 3. Encodes WRKY DNA-binding protein 3 (WRKY3). | 0 |
| RefSeq | XP_021678796.1 | probable WRKY transcription factor 4 isoform X1 [Hevea brasiliensis] | 0 |
| Q9ZQ70 | Probable WRKY transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=WRKY3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2LKB2 | Putative WRKY transcription factor 3 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology