Basic Information
Locus ID:
nbisL1-mrna-1513
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
CHY zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000150F_pilon | 6448113 | 6454932 | + | nbisL1-mrna-1513 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 91,574.31 Da | 53.29 | 86.71 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 659 | 689 | 7.31883E-16 | - |
| CDD | cd12108 | Hr-like | 323 | 425 | 3.23664E-10 | - |
| Pfam | PF14599 | Zinc-ribbon | 740 | 795 | 4.6E-22 | IPR039512 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 316 | 433 | 9.7E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 651 | 764 | 1.2E-7 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 765 | 802 | 1.3E-13 | - |
| SMART | SM00184 | ring_2 | 660 | 734 | 3.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 660 | 735 | 8.623992 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 93 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74770.1 | zinc ion binding. | 0 |
| RefSeq | XP_021665983.1 | zinc finger protein BRUTUS-like At1g18910 [Hevea brasiliensis] | 0 |
| F4HVS0 | Zinc finger protein BRUTUS-like At1g74770 OS=Arabidopsis thaliana OX=3702 GN=At1g74770 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A6MUN3 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology