Basic Information
Locus ID:
nbisL1-mrna-1511
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 12380653 | 12381610 | + | nbisL1-mrna-1511 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.52 | 18,183.15 Da | 33.65 | 81.70 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 94 | 156 | 7.17868E-19 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 17 | 79 | 2.2E-16 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 92 | 155 | 8.6E-16 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 8 | 156 | 7.68E-45 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 82 | 7.8E-22 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 83 | 161 | 8.6E-25 | - |
| SMART | SM00054 | efh_1 | 130 | 158 | 7.4E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 54 | 82 | 0.047 | IPR002048 |
| SMART | SM00054 | efh_1 | 94 | 122 | 1.7E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 18 | 46 | 2.7E-4 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 90 | 125 | 15.517639 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 50 | 85 | 10.3012 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 126 | 161 | 13.592857 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 14 | 49 | 14.569197 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 27 | 39 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 63 | 75 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 103 | 115 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 139 | 151 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03000.1 | EF hand calcium-binding protein family. Calmodulin like protein localized in the plant vacuolar compartment with a function of binding and modifying the activity of a tonoplast transporter (AtNHX1) from within the vacuole in a Ca+2- and pH-dependent manner | 0 |
| RefSeq | XP_038990499.1 | probable calcium-binding protein CML18 [Hibiscus syriacus] | 0 |
| Q9AWK2 | Probable calcium-binding protein CML11 OS=Oryza sativa subsp. japonica OX=39947 GN=CML11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A3BFE0 | Putative calcium-binding protein CML17 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110206pilonHSYRG00440 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology