Basic Information
Locus ID:
nbisL1-mrna-15083
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000134F_pilon | 472319 | 478595 | - | nbisL1-mrna-15083 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 83,765.32 Da | 47.88 | 94.84 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 53 | 351 | 1.72707E-170 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 369 | 669 | 3.21951E-166 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 374 | 664 | 3.7E-27 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 52 | 350 | 2.09E-40 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 368 | 670 | 7.06E-42 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 367 | 669 | 2.8E-43 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 51 | 350 | 1.1E-35 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 368 | 670 | 36.992805 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 53 | 352 | 34.459332 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 730 | 745 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 713 | 745 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_002529027.2 | glycerophosphodiester phosphodiesterase GDPDL3 [Ricinus communis] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2K3S5 | glycerophosphodiester phosphodiesterase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology