Basic Information
Locus ID:
nbisL1-mrna-15080
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001334F_pilon | 655364 | 660766 | - | nbisL1-mrna-15080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.15 | 57,852.52 Da | 50.44 | 83.46 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 334 | 466 | 3.0E-16 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 76 | 208 | 2.2E-19 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 70 | 208 | 7.72E-26 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 320 | 467 | 6.02E-23 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 49 | 209 | 9.1E-19 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 311 | 466 | 8.4E-17 | IPR036378 |
| SMART | SM00554 | fasc_3 | 362 | 467 | 1.8E-13 | IPR000782 |
| SMART | SM00554 | fasc_3 | 105 | 209 | 2.5E-21 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 64 | 206 | 20.757257 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 321 | 464 | 18.668489 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 495 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 302 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60490.1 | FASCICLIN-like arabinogalactan-protein 12. | 0 |
| RefSeq | XP_024441931.1 | fasciclin-like arabinogalactan protein 12 [Populus trichocarpa] | 0 |
| Q8LEE9 | Fasciclin-like arabinogalactan protein 12 OS=Arabidopsis thaliana OX=3702 GN=FLA12 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6N2KJ58 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology