Basic Information
Locus ID:
nbisL1-mrna-15034
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
heat shock
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000134F_pilon | 188883 | 192390 | - | nbisL1-mrna-15034 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 55,951.06 Da | 42.24 | 80.17 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00183 | Hsp90 protein | 21 | 462 | 2.2E-214 | IPR001404 |
| SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 43 | 298 | 3.64E-109 | IPR020568 |
| SUPERFAMILY | SSF110942 | HSP90 C-terminal domain | 322 | 443 | 5.75E-39 | IPR037196 |
| Gene3D | G3DSA:3.30.230.80 | - | 42 | 210 | 1.1E-85 | - |
| Gene3D | G3DSA:1.20.120.790 | - | 298 | 447 | 2.5E-67 | IPR037196 |
| Gene3D | G3DSA:3.40.50.11260 | - | 211 | 297 | 4.6E-42 | - |
| PIRSF | PIRSF002583 | HSP90_HTPG | 2 | 479 | 2.9E-160 | IPR001404 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 453 | 479 | - | - |
| Coils | Coil | Coil | 463 | 479 | - | - |
| Coils | Coil | Coil | 302 | 322 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
map04217 (Necroptosis)
ko04612 (Antigen processing and presentation)
map04612 (Antigen processing and presentation)
map04621 (NOD-like receptor signaling pathway)
ko04626 (Plant-pathogen interaction)
map04626 (Plant-pathogen interaction)
map04657 (IL-17 signaling pathway)
map04659 (Th17 cell differentiation)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G56030.1 | heat shock protein 81-2. A member of heat shock protein 90 (HSP90) gene family. Expressed in all tissues and abundant in root apical meristem, pollen and tapetum. Expression is NOT heat-induced but induced by IAA and NaCl. Interacts with HsfA1d in the cytosol and the nucleus and negatively regulates HsfA1d. Did not bind to AtHsfA4c. | 0 |
| RefSeq | XP_015880753.2 | heat shock cognate protein 80 [Ziziphus jujuba var. spinosa] | 0 |
| P36181 | Heat shock cognate protein 80 OS=Solanum lycopersicum OX=4081 GN=HSC80 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2M1A1 | Heat shock cognate protein 80 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology