Basic Information
Locus ID:
nbisL1-mrna-15015
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000134F_pilon | 84036 | 88972 | - | nbisL1-mrna-15015 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.77 | 34,386.83 Da | 41.69 | 75.88 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 51 | 116 | 1.0007E-38 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 230 | 293 | 3.11149E-19 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 233 | 297 | 1.6E-9 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 52 | 116 | 1.4E-13 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 227 | 300 | 9.43E-20 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 51 | 124 | 1.57E-24 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 212 | 302 | 2.0E-16 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 29 | 130 | 1.7E-24 | IPR036431 |
| SMART | SM00398 | hmgende2 | 229 | 298 | 6.1E-11 | IPR009071 |
| SMART | SM00501 | bright_3 | 36 | 121 | 8.4E-21 | IPR001606 |
| SMART | SM01014 | ARID_2 | 35 | 116 | 2.4E-17 | - |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 230 | 297 | 12.494254 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 27 | 120 | 21.545149 | IPR001606 |
| PRINTS | PR00886 | High mobility group (HMG1/HMG2) protein signature | 281 | 301 | 7.7E-5 | - |
| PRINTS | PR00886 | High mobility group (HMG1/HMG2) protein signature | 262 | 281 | 7.7E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 230 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_002531766.2 | high mobility group B protein 10 isoform X4 [Ricinus communis] | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KIB2 | Transcription factor OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology