Basic Information
Locus ID:
nbisL1-mrna-14997
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Ribulose bisphosphate carboxylase oxygenase activase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 12326061 | 12337884 | - | nbisL1-mrna-14997 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 49,012.21 Da | 40.63 | 86.92 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 172 | 314 | 7.7E-13 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 161 | 342 | 3.04E-17 | IPR027417 |
| Gene3D | G3DSA:1.10.8.1070 | - | 318 | 433 | 1.4E-38 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 132 | 317 | 3.1E-32 | IPR027417 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 75 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73110.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_021660498.1 | ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic isoform X1 [Hevea brasiliensis] | 0 |
| P93431 | Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RCA PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2KW36 | Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18354 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11228 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah025041 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g189100 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25764, Sbi_jg9591 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19049 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020494 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl43896, Sgl48664 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000015501, gene:ENSEOMG00000032918 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30130830 |
| Apiaceae | Apium graveolens | 1 | AgUnG00145 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G012940 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721519 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.2483.V1.1, AsparagusV1_05.2484.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G13139 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G73110.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018573m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g28070.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g051420.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0667 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g09080 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0522s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g29990 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-843 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.628 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00001794, Pov_00020082, Pov_00041655 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G18221 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2575, BH09.2799, CH09.2999 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0300950, gene-QOZ80_4BG0331680 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0202450.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_007949, gene-QYE76_047048 |
| Poaceae | Oryza coarctata | 2 | Oco07G018000, Oco08G017360 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g56320.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G266600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0300543, Pt_Chr0300565 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr25G001570, Chr30G001570 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G847900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG070490, gene_TRIDC2BG076210 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G501200.1, TraesCS2B02G529300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb067660_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6080 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22134 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2605, evm.TU.LG08.187 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g20140 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.60 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-28500, nbisL1-mrna-28501 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16383 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14091 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000023l.285 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018880 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14997 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21463 |
| Salicaceae | Populus euphratica | 1 | populus_peu04157 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633111 |
| Solanaceae | Solanum chilense | 1 | SOLCI001626800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014605 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.15031_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0786 |
| Zosteraceae | Zostera marina | 1 | Zosma02g17850.v3.1 |