Basic Information
Locus ID:
nbisL1-mrna-1499
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
PPR repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 9926593 | 9933466 | - | nbisL1-mrna-1499 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 64,217.46 Da | 42.67 | 96.67 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00180 | PKc | 373 | 525 | 5.59067E-12 | - |
| Pfam | PF00069 | Protein kinase domain | 411 | 520 | 7.8E-10 | IPR000719 |
| Pfam | PF02574 | Homocysteine S-methyltransferase | 24 | 317 | 6.0E-68 | IPR003726 |
| SUPERFAMILY | SSF82282 | Homocysteine S-methyltransferase | 18 | 317 | 5.76E-73 | IPR036589 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 371 | 530 | 1.35E-23 | IPR011009 |
| Gene3D | G3DSA:3.20.20.330 | - | 12 | 325 | 6.4E-94 | IPR036589 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 461 | 579 | 1.3E-36 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 376 | 448 | 2.8E-25 | - |
| SMART | SM00220 | serkin_6 | 365 | 581 | 4.7E-4 | IPR000719 |
| TIGRFAM | TIGR03724 | arch_bud32: Kae1-associated kinase Bud32 | 371 | 576 | 2.0E-59 | IPR022495 |
| ProSiteProfiles | PS50970 | Homocysteine-binding domain profile. | 11 | 333 | 41.090748 | IPR003726 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 365 | 582 | 13.771477 | IPR000719 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 489 | 501 | - | IPR008266 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G63250.1 | homocysteine methyltransferase 2. Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds. | 0 |
| RefSeq | XP_002300824.4 | homocysteine S-methyltransferase 2 isoform X1 [Populus trichocarpa] | 0 |
| Q9M1W4 | Homocysteine S-methyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=HMT-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6MCI2 | non-specific serine/threonine protein kinase OS=Mikania micrantha OX=192012 GN=E3N88_33781 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology