Basic Information
Locus ID:
nbisL1-mrna-14979
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Carbohydrate-binding protein of the ER
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 10225901 | 10226268 | - | nbisL1-mrna-14979 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.21 | 10,078.53 Da | 49.65 | 95.44 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 9 | 90 | 1.7E-17 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 9 | 90 | 3.51E-29 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 2 | 90 | 1.5E-32 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 90 | 19.962168 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 40 | 52 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05700.1 | Leucine-rich repeat transmembrane protein kinase protein. | 0 |
| RefSeq | XP_037495445.1 | senescence-induced receptor-like serine/threonine-protein kinase [Jatropha curcas] | 0 |
| C0LGD6 | Probable LRR receptor-like serine/threonine-protein kinase At1g05700 OS=Arabidopsis thaliana OX=3702 GN=At1g05700 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067KXH2 | Protein kinase domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_24831 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_06G004800 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g08540.v2.2, SpUn1948_0010.v2.2 |
| Casuarinaceae | Casuarina equisetifolia | 4 | Ceq02G0918, Ceq02G0924, Ceq02G0926, Ceq02G0935 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl02G0949, Cgl02G0953, Cgl02G0963 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14979 |