Basic Information
Locus ID:
nbisL1-mrna-14976
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001334F_pilon | 29856 | 34960 | + | nbisL1-mrna-14976 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 72,096.48 Da | 43.47 | 92.75 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 261 | 303 | 5.46705E-28 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 384 | 423 | 9.2E-10 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 468 | 505 | 1.7E-4 | IPR000225 |
| Pfam | PF04564 | U-box domain | 257 | 327 | 3.4E-21 | IPR003613 |
| Pfam | PF05536 | Neurochondrin | 520 | 644 | 1.0E-5 | IPR008709 |
| SUPERFAMILY | SSF48371 | ARM repeat | 355 | 636 | 1.01E-47 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 257 | 333 | 1.67E-31 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 533 | 649 | 8.1E-17 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 10 | 117 | 5.0E-9 | IPR036537 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 257 | 330 | 2.3E-31 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 346 | 532 | 2.0E-37 | IPR011989 |
| SMART | SM00185 | arm_5 | 384 | 424 | 2.3E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 507 | 547 | 120.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 466 | 506 | 1.5 | IPR000225 |
| SMART | SM00185 | arm_5 | 425 | 465 | 11.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 260 | 323 | 8.1E-36 | IPR003613 |
| SMART | SM00185 | arm_5 | 548 | 588 | 13.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 518 | 560 | 9.5724 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 395 | 437 | 11.1824 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 256 | 330 | 46.291313 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 630 | 665 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 632 | 665 | - | - |
| Coils | Coil | Coil | 621 | 641 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_012065019.1 | U-box domain-containing protein 13 [Jatropha curcas] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LYH9 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology