Basic Information
Locus ID:
nbisL1-mrna-14945
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001461F_pilon | 2272234 | 2273031 | - | nbisL1-mrna-14945 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 25,966.39 Da | 52.13 | 85.61 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 49 | 78 | 3.4E-7 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 48 | 107 | 1.06E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 41 | 139 | 8.5E-11 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 49 | 104 | 10.010774 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 68 | 77 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_041012425.1 | uncharacterized protein LOC121255929 [Juglans microcarpa x Juglans regia] | 0 |
| TrEMBL | A0A2I4DZD3 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology