Basic Information
Locus ID:
nbisL1-mrna-14938
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000160F_pilon | 2624181 | 2625017 | + | nbisL1-mrna-14938 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 31,412.60 Da | 54.03 | 94.03 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 60 | 89 | 5.4E-7 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 59 | 118 | 1.41E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 50 | 150 | 1.2E-10 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 60 | 115 | 10.010774 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 79 | 88 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 202 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 28 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_042981249.1 | uncharacterized protein LOC122310994 [Carya illinoinensis] | 0 |
| TrEMBL | A0A1Q3C2X7 | Zf-RING_LisH domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_18019 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology